PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g188660.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 412aa MW: 47620.9 Da PI: 8.0275

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g188660.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ ++Hi +H Pd.00g188660.m02 56 YYCEYCGICRSKKSLITSHILSH 78 89*******************96 PP
2	zf-C2H2	19.9	1.9e-06	101	122	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H Pd.00g188660.m02 101 TCQECGVTFRKPAHLKQHMQSH 122 6*******************99 PP
3	zf-C2H2	15.8	3.9e-05	134	158	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ dC+ s++rk++L+rH+ H Pd.00g188660.m02 134 YICSvdDCHSSYRRKDHLNRHLLQH 158 89*******************9887 PP
4	zf-C2H2	13.6	0.0002	163	188	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ F + n++rH + H Pd.00g188660.m02 163 FKCPieNCNREFGFQGNMTRHVNElH 188 89*******************99888 PP
5	zf-C2H2	12.4	0.00049	203	227	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C k+F+ s L++H +H Pd.00g188660.m02 203 HVCKeiGCRKVFRFASRLRKHEDSH 227 79*******************9888 PP
6	zf-C2H2	17.7	1e-05	294	318	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C ++F++ksnL +H + H Pd.00g188660.m02 294 KCDykGCLRTFTTKSNLAKHVKAvH 318 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MKTLDSLHCP SEISGSQIPN AVACSLVGET FRVGALAMDK GQAEMEGPIF RDIRRYYCEY 60 CGICRSKKSL ITSHILSHHK DEMEMSNVDE DREVEQEKSN TCQECGVTFR KPAHLKQHMQ 120 SHSLEGIFYG IRPYICSVDD CHSSYRRKDH LNRHLLQHQG KLFKCPIENC NREFGFQGNM 180 TRHVNELHSE DSPSTSGGAQ KQHVCKEIGC RKVFRFASRL RKHEDSHVKL DTVEAFCSEP 240 GCMKHFTNEQ CLRAHIHSCH QHTTCEICGT KQLRNNIKRH LLTHEDKHSI ERIKCDYKGC 300 LRTFTTKSNL AKHVKAVHLE HKPFVCSFSG CGLRFAYKHV RDNHEKTGCH VYTQGDFEEA 360 DEQFRSRPRG GRKRECPDIP MLVRKRVTPP NQLGQECEYI PWLHSQEDND EQ

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MKTLDSLHCP SEISGSQIPN AVACSLVGET FRVGALAMDK GQAEMEGPIF RDIRRYYCEY  60
CGICRSKKSL ITSHILSHHK DEMEMSNVDE DREVEQEKSN TCQECGVTFR KPAHLKQHMQ  120
SHSLEGIFYG IRPYICSVDD CHSSYRRKDH LNRHLLQHQG KLFKCPIENC NREFGFQGNM  180
TRHVNELHSE DSPSTSGGAQ KQHVCKEIGC RKVFRFASRL RKHEDSHVKL DTVEAFCSEP  240
GCMKHFTNEQ CLRAHIHSCH QHTTCEICGT KQLRNNIKRH LLTHEDKHSI ERIKCDYKGC  300
LRTFTTKSNL AKHVKAVHLE HKPFVCSFSG CGLRFAYKHV RDNHEKTGCH VYTQGDFEEA  360
DEQFRSRPRG GRKRECPDIP MLVRKRVTPP NQLGQECEYI PWLHSQEDND EQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-147	C2H2 family protein