PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g188660.m03

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 301aa MW: 34855.5 Da PI: 8.7734

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g188660.m03	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	52	77	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ F + n++rH + H Pd.00g188660.m03 52 FKCPieNCNREFGFQGNMTRHVNElH 77 89*******************99888 PP
2	zf-C2H2	12.9	0.00033	92	116	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C k+F+ s L++H +H Pd.00g188660.m03 92 HVCKeiGCRKVFRFASRLRKHEDSH 116 79*******************9888 PP
3	zf-C2H2	18.2	6.8e-06	183	207	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C ++F++ksnL +H + H Pd.00g188660.m03 183 KCDykGCLRTFTTKSNLAKHVKAvH 207 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MRDGSDLNGL VPGGRPPVKL HQVNLNHALF GLSYRRKDHL NRHLLQHQGK LFKCPIENCN 60 REFGFQGNMT RHVNELHSED SPSTSGGAQK QHVCKEIGCR KVFRFASRLR KHEDSHVKLD 120 TVEAFCSEPG CMKHFTNEQC LRAHIHSCHQ HTTCEICGTK QLRNNIKRHL LTHEDKHSIE 180 RIKCDYKGCL RTFTTKSNLA KHVKAVHLEH KPFVCSFSGC GLRFAYKHVR DNHEKTGCHV 240 YTQGDFEEAD EQFRSRPRGG RKRECPDIPM LVRKRVTPPN QLGQECEYIP WLHSQEDNDE 300 Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.1	1e-109	C2H2 family protein