PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g188970.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 757aa MW: 84038.9 Da PI: 7.0196

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g188970.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	30.9	3.5e-10	597	639	9	50
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50 r vtf kR++ ++ K E+ +LC++ ++ +++ s+ k+ ++ Pd.00g188970.m01 597 RRVTFKKRKASLFRKLTEITTLCGIIACAVVYDpSDSKMDAWP 639 89**********************9998777751567788777 PP

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence
MLLQKTKPPN FNVLFNAIEF SEPLVTFGQP NNSHPMLPQT TPLSQQSSQH CHPNYSLDNV 60 TYTKLIQYST KTGSLVHGKL AHAHIVKTCF KPCLFLLNNL LNMYCKRGEL DSACNLFDKM 120 PKRNVISYNS LISGYTQVGL FDKAMGVFNE ARMAGLKLDK FTYAGALCVC GQTCDIELGK 180 LVHGLIVLSG SGSDVVLTNS LMDMYSKCGR VDHAKILFEN SDNLDDVSWN SLIASYARIG 240 ANEETLRTLV KMHQCGLSLN TYTLGSALKA CCKIFDNSEL FGKLLHGYTV KLGLNLDVVV 300 GTALLDMYAK TGDLGDAIQI FKVMPYRNVV MYNAMIAGFL QIDTFSYEHA NEVFNLLSQM 360 QRLGVKPSTF TFSIILKACK SVEAFEYGKQ VHTQVCKYNL QGDEFIGSGL IDFYSSLGLF 420 EDALKCFNLT PRLDIVSWTS MVAGYIQNGE TESAFDLFYK LLASGKKPDE FIISSMLGAC 480 ANLAAARSGE QIQGYAVKAG VGKFTIVQNS QICMYAKSGD IDSANLTFTE TENPDVVSWS 540 VMICSKAQHG CAREALELFE LMKNCGIAPN HITFLGVLTA CSHGGLVEEG LRRAHVRRVT 600 FKKRKASLFR KLTEITTLCG IIACAVVYDP SDSKMDAWPS PQEAFYVLEN FKKLPEQRRG 660 QFMMDQKAFL KKNISRLNGQ LERARFKNQA LDAELLLIEY LEGKNLSDSS RLGSLLALED 720 QLAKKISFIT NRIEFMEVLE PNEVDAEINS DEMGDQG

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence

MLLQKTKPPN FNVLFNAIEF SEPLVTFGQP NNSHPMLPQT TPLSQQSSQH CHPNYSLDNV  60
TYTKLIQYST KTGSLVHGKL AHAHIVKTCF KPCLFLLNNL LNMYCKRGEL DSACNLFDKM  120
PKRNVISYNS LISGYTQVGL FDKAMGVFNE ARMAGLKLDK FTYAGALCVC GQTCDIELGK  180
LVHGLIVLSG SGSDVVLTNS LMDMYSKCGR VDHAKILFEN SDNLDDVSWN SLIASYARIG  240
ANEETLRTLV KMHQCGLSLN TYTLGSALKA CCKIFDNSEL FGKLLHGYTV KLGLNLDVVV  300
GTALLDMYAK TGDLGDAIQI FKVMPYRNVV MYNAMIAGFL QIDTFSYEHA NEVFNLLSQM  360
QRLGVKPSTF TFSIILKACK SVEAFEYGKQ VHTQVCKYNL QGDEFIGSGL IDFYSSLGLF  420
EDALKCFNLT PRLDIVSWTS MVAGYIQNGE TESAFDLFYK LLASGKKPDE FIISSMLGAC  480
ANLAAARSGE QIQGYAVKAG VGKFTIVQNS QICMYAKSGD IDSANLTFTE TENPDVVSWS  540
VMICSKAQHG CAREALELFE LMKNCGIAPN HITFLGVLTA CSHGGLVEEG LRRAHVRRVT  600
FKKRKASLFR KLTEITTLCG IIACAVVYDP SDSKMDAWPS PQEAFYVLEN FKKLPEQRRG  660
QFMMDQKAFL KKNISRLNGQ LERARFKNQA LDAELLLIEY LEGKNLSDSS RLGSLLALED  720
QLAKKISFIT NRIEFMEVLE PNEVDAEINS DEMGDQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22590.2	2e-21	M-type_MADS family protein