PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g191880.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 291aa    MW: 32453.5 Da    PI: 6.6107
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g191880.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-05255273523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                        Cg +F+ + +Lk+H+++H
  Pd.00g191880.m01 255 ECGATFKKPAYLKQHMQSH 273
                       6****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MEFSFKSLNL GIETSDNAKT TMHRIIFPCI LFRENAFSSC LSLIRFSHGY DLLDVAHTKD  60
LMSILELTVP AGWKVRGHFT GLITFSPLLL AGSTRMVLSC TLIPIYQWQS GISSGGDGAA  120
SSSDIFLSSF AELWKCKRRR LRVVTWKGLW QNRFRVETNE NDGSVVPYGG KCLSVQMFKP  180
KLFLLGLVGS YGANGMSCMD ILFRTSISII VWMINDALLC LDHCDLYSLE EEMEMAEETD  240
GDGEGEREKS NTSQECGATF KKPAYLKQHM QSHSLEVSEV VLRKPAAACI A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137141KRRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.29e-09C2H2 family protein