PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g191890.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 242aa    MW: 27107 Da    PI: 4.7656
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g191890.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.41.5e-35131121100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca+Ck +rrkC + C +apyfpa++ ++f+n+hk+FG+sn++k+++ + +++r++a++s++ e++ar +dPv+G++g+i+ l+ q++ l+ e
  Pd.00g191890.m01  13 PCASCKQQRRKCDETCEMAPYFPASRYSEFQNAHKIFGVSNIQKIMAMAAPDQRQAAAESILTEGNARKNDPVNGCLGIIRGLNAQIQGLERE 105
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       l+ +k++
  Pd.00g191890.m01 106 LHIMKQH 112
                       **99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MENRDQGAAQ NHPCASCKQQ RRKCDETCEM APYFPASRYS EFQNAHKIFG VSNIQKIMAM  60
AAPDQRQAAA ESILTEGNAR KNDPVNGCLG IIRGLNAQIQ GLERELHIMK QHLELCKEKE  120
ELDGKKNQSK EEDLQHDQSD GLNSPIHPDQ PSHVMVEMRK YEQGYNYWST LEDAEEKVFD  180
IQLIEPVLFE SNLKGNASSS APGESRDGKE KEEGEIASAA ASKAKEKQPS ESLQEKTTED  240
EA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-29LBD family protein