PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g191980.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 978aa MW: 107588 Da PI: 4.9458

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g191980.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.5	9.9e-08	608	628	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f ++G+C++GdrC F+H Pd.00g191980.m01 608 PCNNFKENGFCSRGDRCMFSH 628 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 978 aa Download sequence
MEEANIETEK PSQTLIAFPP HCRRHLKSGT YRTLVRILSH CHDESQHSAA DQNVPQELNQ 60 DNGSIEPVQA TEKEVLGNVE LDGPGSMGPK NSAAEEVGVA DESCNPNDFQ EQLEQIKSIL 120 NVEENEDFSK LNEVMDIENI LAIDYQDLDF DPEQILMDEP ERMAKGNEDD THRPSASLDQ 180 NQSGSDKVAL LTNQEEHDAT VISESSGQMV SGTLDSSLHT VAMGESSNQR ESNEQNSLLM 240 TNRLDVEPIM QQKAMELETY VSSEGAKESC IPITEVGAIK EPENFSQKVP DSFDFSLNKD 300 MVAEASKPTE YSKDKSSSRE NNDLEVEHEM QQKDKELEEI VCTRTAINSP SHMSEDIEEG 360 EISSDDGMDD RSNDVLLHDT VVLEEKKVPE VQIFKDVLDR KEHSCKVAND KDFGSNSFLV 420 DMVDEGKIDR GAELRESSRT EMICRPGVVE GKNVKALKVD ESNPLLEGGR IEMQDNGVRM 480 GIGCPAAGNH GITSEEMWDD GAFGFVDVTI SNISFCEQCI VQAKERKKRA EKNRELGVKR 540 LKLHPIQKAK TVAYCRHFVR GRCHEGDKCK FSHDTVPLTK SKPCVHFARQ SCMKGDDCQY 600 DHELSKYPCN NFKENGFCSR GDRCMFSHKI PSNEDSATAA CKPELKPPMV LNNSRSQQVN 660 TGGASQQNVH ALAYSTGIHS RNNTKQNVTQ TVLKQPEPAN KGISFPSILK SSLVHSSMSK 720 QEGLAPDRNN GAKAGNQIDQ SPLSSVQNSI EILKRTPPVT TPKGINFLSF GKASPDDARG 780 KNQVSRQTSP SVSETVKNLN GMLKANQSAA LQGTHFNPFG KSSVASSSSE KPVSLPSFWN 840 NGSNIDSCGS QTTADKSQNS SGISLRLPPS PLTSGQSSDR IASRFCKDTA NSFQRGLFST 900 LAFAAKYKTQ NMNQSIGSTG AQVDNETRNS SISDSVEIHP PSSAAGIDLR LQVTCNSKLV 960 ESYARLYPFL LPIEKFDN

Sequence ? help Back to Top

Protein Sequence Length: 978 aa Download sequence

MEEANIETEK PSQTLIAFPP HCRRHLKSGT YRTLVRILSH CHDESQHSAA DQNVPQELNQ  60
DNGSIEPVQA TEKEVLGNVE LDGPGSMGPK NSAAEEVGVA DESCNPNDFQ EQLEQIKSIL  120
NVEENEDFSK LNEVMDIENI LAIDYQDLDF DPEQILMDEP ERMAKGNEDD THRPSASLDQ  180
NQSGSDKVAL LTNQEEHDAT VISESSGQMV SGTLDSSLHT VAMGESSNQR ESNEQNSLLM  240
TNRLDVEPIM QQKAMELETY VSSEGAKESC IPITEVGAIK EPENFSQKVP DSFDFSLNKD  300
MVAEASKPTE YSKDKSSSRE NNDLEVEHEM QQKDKELEEI VCTRTAINSP SHMSEDIEEG  360
EISSDDGMDD RSNDVLLHDT VVLEEKKVPE VQIFKDVLDR KEHSCKVAND KDFGSNSFLV  420
DMVDEGKIDR GAELRESSRT EMICRPGVVE GKNVKALKVD ESNPLLEGGR IEMQDNGVRM  480
GIGCPAAGNH GITSEEMWDD GAFGFVDVTI SNISFCEQCI VQAKERKKRA EKNRELGVKR  540
LKLHPIQKAK TVAYCRHFVR GRCHEGDKCK FSHDTVPLTK SKPCVHFARQ SCMKGDDCQY  600
DHELSKYPCN NFKENGFCSR GDRCMFSHKI PSNEDSATAA CKPELKPPMV LNNSRSQQVN  660
TGGASQQNVH ALAYSTGIHS RNNTKQNVTQ TVLKQPEPAN KGISFPSILK SSLVHSSMSK  720
QEGLAPDRNN GAKAGNQIDQ SPLSSVQNSI EILKRTPPVT TPKGINFLSF GKASPDDARG  780
KNQVSRQTSP SVSETVKNLN GMLKANQSAA LQGTHFNPFG KSSVASSSSE KPVSLPSFWN  840
NGSNIDSCGS QTTADKSQNS SGISLRLPPS PLTSGQSSDR IASRFCKDTA NSFQRGLFST  900
LAFAAKYKTQ NMNQSIGSTG AQVDNETRNS SISDSVEIHP PSSAAGIDLR LQVTCNSKLV  960
ESYARLYPFL LPIEKFDN