PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g193950.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HB-PHD

Protein Properties

Length: 1000aa MW: 109623 Da PI: 4.4829

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g193950.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.1	6.3e-13	835	878	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +++L + F++n+yp+++++e LA++lgL +qV+ WF N R Pd.00g193950.m01 835 EAVTQRLCKSFKENHYPDRSMKESLARELGLMAKQVSKWFENAR 878 667899************************************99 PP
2	PHD	37.9	3.9e-13	467	522	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ +++++lCdg C++ fH+ Cl+++l se++p + wlC+ C++k Pd.00g193950.m01 467 FCAKCGSkdVSVDNDIILCDGaCDRGFHQFCLEPPLLSEDIPPDdeGWLCPGCDCK 522 699*964344****66***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence
MADAAQLEIP PECVSSQTAK CQEESTSGQI HEIGSESQCS EKTKENIGCK VVQNELLEIC 60 KASNNPDEQS QSFSENLTEN SHVENLGLPA EDVNKSSQSG AQNVTKNSLT EQLEMPHEDP 120 DVNNQTDKTS CSGQMSLEQT NDSGFGTSSR EPDEEKHPSG SFCVQNELLQ TIMPLPICSG 180 SEQLQPISEN VNMASLNDQA GLPPEDVSKT CQTEKISCSH QITLQQVNEF GSGNVPSEPA 240 KQKDQLDSVP AQNDEVKTSK AISSSIVFEQ PGPSIEAMTE DSPIGHSEPP LEDASKSLSD 300 KEMEPLPEDV TQNSSLQQSE TPSKNALKIS SCLGPKDKKN PKSRKRKYMS RSFVRSDRVL 360 RSRTGEKEKP KDFKLSNNVA TLESSNSIAN VSYEKSLIDA YSGEGWKGSS LEKLKPEKEL 420 QRATSEILRR KLKIRDLFQR LESLCAEGMF PESLFDSEGQ IDSEDIFCAK CGSKDVSVDN 480 DIILCDGACD RGFHQFCLEP PLLSEDIPPD DEGWLCPGCD CKVDCIDLLN DSQGTDLSVT 540 DSWEKVFPEA AAAASAGENQ DNHGLPSDDS DDNDYDPDGP ETDDKVEGEE SSSDESEYAS 600 ASDGLETPKS NDEQYLGLPS EDSEDDDYNP YAPDVHEDVK QESSNSDFTS DSEDLGAALD 660 DNIMSSEDVE GPKSMSLGSS RRGQKKHSLK DELMSLLESG PGQGESAPLS GKRHIERLDY 720 KRLHDEAYGN VPTDSSDDED WNDIAMQRKR KNGTGQVANR SPNGKTSNIK NGVITKDIKP 780 DVDENENTPR RTPHRKSNVE DTSNLSNKSP KGSTKSGSTS GRAGSSRSTY SRLGEAVTQR 840 LCKSFKENHY PDRSMKESLA RELGLMAKQV SKWFENARHC LKVGVDKSAS ENCAPSPQTN 900 RKQLEQGDAI VGDSDHSGAQ NKELHRTDDP MIGCCSRDVK DSELVTPGSS RSKLSTPNNR 960 KRKRRSDDPD PKTETPTPPA EPETNRKPSR VMTRRRKSVS

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence

MADAAQLEIP PECVSSQTAK CQEESTSGQI HEIGSESQCS EKTKENIGCK VVQNELLEIC  60
KASNNPDEQS QSFSENLTEN SHVENLGLPA EDVNKSSQSG AQNVTKNSLT EQLEMPHEDP  120
DVNNQTDKTS CSGQMSLEQT NDSGFGTSSR EPDEEKHPSG SFCVQNELLQ TIMPLPICSG  180
SEQLQPISEN VNMASLNDQA GLPPEDVSKT CQTEKISCSH QITLQQVNEF GSGNVPSEPA  240
KQKDQLDSVP AQNDEVKTSK AISSSIVFEQ PGPSIEAMTE DSPIGHSEPP LEDASKSLSD  300
KEMEPLPEDV TQNSSLQQSE TPSKNALKIS SCLGPKDKKN PKSRKRKYMS RSFVRSDRVL  360
RSRTGEKEKP KDFKLSNNVA TLESSNSIAN VSYEKSLIDA YSGEGWKGSS LEKLKPEKEL  420
QRATSEILRR KLKIRDLFQR LESLCAEGMF PESLFDSEGQ IDSEDIFCAK CGSKDVSVDN  480
DIILCDGACD RGFHQFCLEP PLLSEDIPPD DEGWLCPGCD CKVDCIDLLN DSQGTDLSVT  540
DSWEKVFPEA AAAASAGENQ DNHGLPSDDS DDNDYDPDGP ETDDKVEGEE SSSDESEYAS  600
ASDGLETPKS NDEQYLGLPS EDSEDDDYNP YAPDVHEDVK QESSNSDFTS DSEDLGAALD  660
DNIMSSEDVE GPKSMSLGSS RRGQKKHSLK DELMSLLESG PGQGESAPLS GKRHIERLDY  720
KRLHDEAYGN VPTDSSDDED WNDIAMQRKR KNGTGQVANR SPNGKTSNIK NGVITKDIKP  780
DVDENENTPR RTPHRKSNVE DTSNLSNKSP KGSTKSGSTS GRAGSSRSTY SRLGEAVTQR  840
LCKSFKENHY PDRSMKESLA RELGLMAKQV SKWFENARHC LKVGVDKSAS ENCAPSPQTN  900
RKQLEQGDAI VGDSDHSGAQ NKELHRTDDP MIGCCSRDVK DSELVTPGSS RSKLSTPNNR  960
KRKRRSDDPD PKTETPTPPA EPETNRKPSR VMTRRRKSVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	344	371	RKRKYMSRSFVRSDRVLRSRTGEKEKPK
2	960	965	RKRKRR
3	993	998	TRRRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-88	HB-PHD family protein