PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g198260.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 263aa MW: 29769.1 Da PI: 8.9928

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g198260.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	105	124	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Pd.00g198260.m01 105 FACSICSKTFNRYNNMQMHM 124 78*****************9 PP
2	zf-C2H2	11.8	0.00076	189	211	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k+F k + ++H +++ Pd.00g198260.m01 189 FMCRKCAKTFAVKGDWRTHEKNC 211 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MQCLPLLSQF TDTKPVKIED VGVQKEGFGV KEEKMGQVTV ALRIGLPNST SEADQSDTHH 60 ENKKVSDLKE EGVAMKKSFH GCSFNAESRF WIPTPAQILV GPMQFACSIC SKTFNRYNNM 120 QMHMWGHGSE FRKGPDSLKG TQPAAMLRLP CYCCAQGCKN NINHPRAKPL KDFRTLQTHY 180 KRKHGAKPFM CRKCAKTFAV KGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIRSFGKGH 240 SPHPSLDGFH EDEKECITGS EDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-122	C2H2 family protein