PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g202520.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 678aa MW: 75539 Da PI: 6.47

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g202520.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.7	4e-22	127	227	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++ +++a+++ +++ ++l+ d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + Pd.00g202520.m01 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVAADLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--R 215 99**************************964333..4459********************************************..4 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++el+v+v+r Pd.00g202520.m01 216 GENGELRVGVRR 227 49999***97 PP
2	Auxin_resp	108.8	5.6e-36	253	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+s+seF v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d + W nS+WrsLk Pd.00g202520.m01 253 ASHAIATGTLFSVFYKPRTSRSEFLVSVNKYLEAHSHKLSVGMRFKMRFEGEEVPERRFSGTIVGVCDNTSPGWANSEWRSLK 335 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MTFSASNHPQ GSSRIGMSGD ALYKELWHAC AGPLVSLPRE GERVYYFPQG HMEQLEASMH 60 QGSEQQMPSF NLPSKILCKV VNVQLRAEPE TDEVYAQVTL LPEADQSEIT SPDPPLPETP 120 RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAA DLHGNEWHFR 180 HIFRGQPRRH LLTTGWSVFV SSKKLVAGDA FIFLRGENGE LRVGVRRLMR QPSNMPSSVI 240 SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFLVSV NKYLEAHSHK LSVGMRFKMR 300 FEGEEVPERR FSGTIVGVCD NTSPGWANSE WRSLKVQWDE PSSILRPDRV SPWELEPLVA 360 TTPLNSQPAL RNKRARPPVL PSPSPDLSAL GEWKSQVESP SAFSYSDPQR GRDIYPSPKY 420 NSASKANSLC FTGNNSLAAV SGNSMFWSNR VDGVTEPFSP ITNKDSGERR QGTGNGCRLF 480 GIQLLENSNV EESSPVVMVS GKLGDIRPIS SFDAESDQHS EPSNVNRSDL PSGSCDAEKS 540 CLRSPQESQS RQIRSCTKVH MQGIAVGRAV DLTRFERYKD LLKKLEEMFD IEGELCGSTK 600 KWQVVYTDDE DDMMMVGDDP WHEFCSMVRK IFIYTIEEVK RLSPKIKLTL NEEVKPGKPD 660 SEAAVNTEDQ SSIVGPAY

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MTFSASNHPQ GSSRIGMSGD ALYKELWHAC AGPLVSLPRE GERVYYFPQG HMEQLEASMH  60
QGSEQQMPSF NLPSKILCKV VNVQLRAEPE TDEVYAQVTL LPEADQSEIT SPDPPLPETP  120
RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAA DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SSKKLVAGDA FIFLRGENGE LRVGVRRLMR QPSNMPSSVI  240
SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFLVSV NKYLEAHSHK LSVGMRFKMR  300
FEGEEVPERR FSGTIVGVCD NTSPGWANSE WRSLKVQWDE PSSILRPDRV SPWELEPLVA  360
TTPLNSQPAL RNKRARPPVL PSPSPDLSAL GEWKSQVESP SAFSYSDPQR GRDIYPSPKY  420
NSASKANSLC FTGNNSLAAV SGNSMFWSNR VDGVTEPFSP ITNKDSGERR QGTGNGCRLF  480
GIQLLENSNV EESSPVVMVS GKLGDIRPIS SFDAESDQHS EPSNVNRSDL PSGSCDAEKS  540
CLRSPQESQS RQIRSCTKVH MQGIAVGRAV DLTRFERYKD LLKKLEEMFD IEGELCGSTK  600
KWQVVYTDDE DDMMMVGDDP WHEFCSMVRK IFIYTIEEVK RLSPKIKLTL NEEVKPGKPD  660
SEAAVNTEDQ SSIVGPAY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein