PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g206570.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 120aa    MW: 13891.3 Da    PI: 9.6247
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g206570.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.8e-095581127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      yk  lC ++     C+yG rC+FaHg+
  Pd.00g206570.m01 55 YKKQLCINWPTPEGCPYGKRCRFAHGE 81
                      89999******9*************96 PP
2zf-CCCH28.33.1e-0990115126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       y+t++C++ +r G C   drC+F H+
  Pd.00g206570.m01  90 YRTAECKYVHRLGGCTLSDRCHFLHD 115
                       89***********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    
MKLSELAMKF RLWGFLVSKL ALKFRLCNSM LIVNPLADPT QAPNVHMAPP EIRNYKKQLC  60
INWPTPEGCP YGKRCRFAHG EAELRKHPRY RTAECKYVHR LGGCTLSDRC HFLHDEAGHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-13C3H family protein