PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g208160.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 228aa MW: 25768.8 Da PI: 7.3436

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g208160.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	60	80	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F + L Hi++H Pd.00g208160.m01 60 CNVCGKRFGSGQALGGHISVH 80 **********99999999988 PP
2	zf-C2H2	11.7	0.0008	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F++ L H r H Pd.00g208160.m01 139 HTCNICYKKFPTGQALGGHKRAH 161 79*************99999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MKNFQEEDRE YEGVRDDHHV LSEDRKQGGV HGFDDSKGKE IVLRRLNCEN NQDPDRSRIC 60 NVCGKRFGSG QALGGHISVH FEPHLGPKKM NNKFKFLPGW AKKDRGDMKI ANQTPNYNND 120 FATKYKFPSS KRLKFLDGHT CNICYKKFPT GQALGGHKRA HYFDEAQPVL EAPPAATVKV 180 ASTDDHDDGE TIDPVDSSPL MQLAEQALHL ASRRILDLDL NEPPKGEW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	1e-14	C2H2 family protein