PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g216970.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 269aa MW: 28360.3 Da PI: 6.6978

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g216970.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Pd.00g216970.m01 129 YECKTCNRTFPSFQALGGHRASH 151 99**********99999998887 PP
2	zf-C2H2	13.5	0.00021	219	241	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Pd.00g216970.m01 219 HECSICGAEFTSGQALGGHMRRH 241 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MEAAGGGDHH HLHREEVIMG CKEQQHNNII IKGKRTKRLR PQSPIPFAIP TSSSSPEDGG 60 GGDGGGENDY INSATNLSPT TSAEFQDSTT EEEEDMANCL ILFLEATTAV GPTGAKAGAV 120 AAGGGYYAYE CKTCNRTFPS FQALGGHRAS HKRPKANTGD DQKNKHFAIG LLPSDEEDTQ 180 LFKNSILHNN NNTSSSPLSL HLSNRGLVLS SNKSSSKVHE CSICGAEFTS GQALGGHMRR 240 HRAPAAANTT LALTAPSGLV GIGLEDVPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	5e-34	C2H2 family protein