PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g218340.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 292aa MW: 33588.1 Da PI: 9.8121

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g218340.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.1	3.7e-06	64	88	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ dC sF+rk++L+rH+ H Pd.00g218340.m01 64 YICSvdDCRSSFRRKDHLNRHLLQH 88 89*******************9887 PP
2	zf-C2H2	15.1	6.5e-05	93	118	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC +C++ F ++ n++rH r H Pd.00g218340.m01 93 FKCLieNCNRGFVSQGNMRRHVRElH 118 799999*****************988 PP
3	zf-C2H2	23.8	1.1e-07	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+dCgk+F+ s L++H ++H Pd.00g218340.m01 133 HVCQDCGKVFKFASKLQKHENSH 155 79******************999 PP
4	zf-C2H2	13.8	0.00018	174	198	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +Fs+ksnL++H + H Pd.00g218340.m01 174 KCSykGCLHTFSTKSNLHQHVKAvH 198 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MREVSDLTGP VSGGRPPVKL HQVNLNHVLL GLRNRHFKEV SVGQLPGGRP PGKLHQASLN 60 HRPYICSVDD CRSSFRRKDH LNRHLLQHQG KLFKCLIENC NRGFVSQGNM RRHVRELHNE 120 DDPSANVGGQ KQHVCQDCGK VFKFASKLQK HENSHVKLDS VEAFCSEPGL ERIKCSYKGC 180 LHTFSTKSNL HQHVKAVHLE HKPFVCSFSG CGMRFAYKHV RDKHEKTGRH VYAYGDFEEA 240 DEQFRSRPRG GRKRKYPTIE MLVRKRVTPP DQLGQESEYR SWLLSQEAED EN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	255	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.1	5e-77	C2H2 family protein