PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g220280.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 597aa MW: 66100.3 Da PI: 7.0522

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g220280.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	304	326	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC f +G C++G++C+F H+ Pd.00g220280.m01 304 RLCFKFVSSGSCPRGENCNFQHD 326 566667778*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MAPPKILLCG DVLGHLKQLF KRVNKSAGPF DALFCVGQFF PDSADQLDEF NDYIEGRAQI 60 PLPTYFIGDY GVTATKVLLA ATKDSGNQGF KLDGLKICNN LYWLKGSGKF KLHGLSVAYL 120 SGLQCSDSQQ FGTYSQDDVD VLRAVAEEPG IIDLFLTNKW PSGITNRAAA SDVPPGASEP 180 FGSDSTVAEL VAEIKPRYHI AGTKGVYYAR EPYSNVDAVH VTRFLGLAPK FIHAISPTPA 240 STMSTVEIST KSPTTTLSPY TYGEKTDHAT EAGKRSSDSI SDSQYWRYDV NQKRQKHGAG 300 DGNRLCFKFV SSGSCPRGEN CNFQHDVDAR EQSLRGVCFD FMNKGKCERG PDCKFKHSLQ 360 AEGESNSHQR RGSGNANSNR STECWFCLSS PKVESHLIIS IGEHYYCALA KGPLVEDHVL 420 LIPIGHSPNT LSLPAECEIE LGKFQDALKQ YYKKQGKDVV FFEWASKRTT HANLQAVPVP 480 SAKSAAVQNI FNLAAEKLSF KFETMKSGNN SDGRKMLRTQ FDRNFSFFYV QLPDGTILSH 540 SIEENERFLP QFGREVIAGL LNKADRADWR NCTDSKEEEA KMAGDFKSGF EEFDPNK

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MAPPKILLCG DVLGHLKQLF KRVNKSAGPF DALFCVGQFF PDSADQLDEF NDYIEGRAQI  60
PLPTYFIGDY GVTATKVLLA ATKDSGNQGF KLDGLKICNN LYWLKGSGKF KLHGLSVAYL  120
SGLQCSDSQQ FGTYSQDDVD VLRAVAEEPG IIDLFLTNKW PSGITNRAAA SDVPPGASEP  180
FGSDSTVAEL VAEIKPRYHI AGTKGVYYAR EPYSNVDAVH VTRFLGLAPK FIHAISPTPA  240
STMSTVEIST KSPTTTLSPY TYGEKTDHAT EAGKRSSDSI SDSQYWRYDV NQKRQKHGAG  300
DGNRLCFKFV SSGSCPRGEN CNFQHDVDAR EQSLRGVCFD FMNKGKCERG PDCKFKHSLQ  360
AEGESNSHQR RGSGNANSNR STECWFCLSS PKVESHLIIS IGEHYYCALA KGPLVEDHVL  420
LIPIGHSPNT LSLPAECEIE LGKFQDALKQ YYKKQGKDVV FFEWASKRTT HANLQAVPVP  480
SAKSAAVQNI FNLAAEKLSF KFETMKSGNN SDGRKMLRTQ FDRNFSFFYV QLPDGTILSH  540
SIEENERFLP QFGREVIAGL LNKADRADWR NCTDSKEEEA KMAGDFKSGF EEFDPNK