PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g220490.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 568aa MW: 63619 Da PI: 8.2095

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g220490.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	376	420	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f++L++llP+ +K +Ka++L+ A eY+ sL Pd.00g220490.m01 376 HMISERKRREKLNESFHTLKSLLPPG-----TKKDKASVLTTAREYLTSL 420 8899******************97.....8*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MDTAFQLDEG SRASFLRLIM QSFGCFYICL WSYMPPPSNC LFFLDGVYDE ENQPSSSSGN 60 QARRLFDEYR QSIFNVVENE CVPGFAFRNS LPILELQEID LQRLASSSVQ RQFYQEARIK 120 TAVFMGCKSG EIELGLSNVP QINIKREQMR NWLPEAFSRQ LSPHTAVANR PNNPDQQNPL 180 SSSSSSFRSL STMDSPEYSS ILFNIPTTAT TSHINIPEVF TQAAPNPLQP INIVTSLEPM 240 PPLNIISSSI TSPHQQALQA FSRTRNTQFP NPEIEDAAMT RAILAVLSAS PSSSSHQPPP 300 QTNVPPSSST AHFLTPNTSA FKTYNSSPLA PRTPKSANVR KQIMLKRSIS FLRSLNLMRL 360 REGIQAIRPT SSQLHHMISE RKRREKLNES FHTLKSLLPP GTKKDKASVL TTAREYLTSL 420 RAQVAELSKR NQQLEARLPP AAKEAYNEEA AAAAGSSNER VSVTLTRVVS ESTPDQDQQI 480 FDLQVVLRSV ECCTEDMVIR ILEFLKRVNN VSLMSMEANT WMSGSDSNVN RVILRLRVDQ 540 GTEWDEAAFQ EAVRRVVADL ALNNCRNQ

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MDTAFQLDEG SRASFLRLIM QSFGCFYICL WSYMPPPSNC LFFLDGVYDE ENQPSSSSGN  60
QARRLFDEYR QSIFNVVENE CVPGFAFRNS LPILELQEID LQRLASSSVQ RQFYQEARIK  120
TAVFMGCKSG EIELGLSNVP QINIKREQMR NWLPEAFSRQ LSPHTAVANR PNNPDQQNPL  180
SSSSSSFRSL STMDSPEYSS ILFNIPTTAT TSHINIPEVF TQAAPNPLQP INIVTSLEPM  240
PPLNIISSSI TSPHQQALQA FSRTRNTQFP NPEIEDAAMT RAILAVLSAS PSSSSHQPPP  300
QTNVPPSSST AHFLTPNTSA FKTYNSSPLA PRTPKSANVR KQIMLKRSIS FLRSLNLMRL  360
REGIQAIRPT SSQLHHMISE RKRREKLNES FHTLKSLLPP GTKKDKASVL TTAREYLTSL  420
RAQVAELSKR NQQLEARLPP AAKEAYNEEA AAAAGSSNER VSVTLTRVVS ESTPDQDQQI  480
FDLQVVLRSV ECCTEDMVIR ILEFLKRVNN VSLMSMEANT WMSGSDSNVN RVILRLRVDQ  540
GTEWDEAAFQ EAVRRVVADL ALNNCRNQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	380	385	ERKRRE
2	381	386	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-70	bHLH family protein