PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g224600.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 330aa MW: 36133 Da PI: 8.4182

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g224600.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	226	248	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H + H Pd.00g224600.m01 226 ECPQCGAKFSSVTTLVDHVEKvH 248 5*****************99888 PP
2	zf-C2H2	15.6	4.6e-05	265	286	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+C+k F+++ L+ H + H Pd.00g224600.m01 265 CPKCSKGFRDPVALVEHVERdH 286 *****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MGTPEFPDLG RHCYVADCQQ IDFLPFTCDS CHQVFCLEHR SSIKHNCPKA DRQNVTVVIC 60 PLCAKGVHLI PDEDANITWE RHVNAECDPS NYEKATKKKK CPIPGCKELL TFSNTIKCRD 120 CTVDHCLKHR FGPDHKCPGP KKPTAGFPFS GLLSRSRKEV SKPNHAPAAS SSKWSNSFLT 180 AASSFRASAE ASVAKLSSEL SQKWQIAKDG AGQSSSSGSR NGQLEECPQC GAKFSSVTTL 240 VDHVEKVHEK GGNRAGVKKM TIDACPKCSK GFRDPVALVE HVERDHGGGF SSLRSALAGI 300 QTRLVFVQFE RYPSQFLSLS FPSLHPELSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-119	C2H2 family protein