PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g236500.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 28825.8 Da    PI: 6.3163
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g236500.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.9e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien   rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+ss
  Pd.00g236500.m01  9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59
                      79***********************************************96 PP
2K-box69.78.9e-248417212100
             K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       + +++ ++el+ Lk+e  +Lq++q +llG+dL+ LslkeLqqLeqqL+++l +++++K++ll+eq+e+++ +e+++  en++Lr+++ee
  Pd.00g236500.m01  84 KAEKQDSKELDVLKDEFAKLQKKQVRLLGKDLTGLSLKELQQLEQQLNEGLLSVKERKEQLLVEQLEQSRVQEQRAILENETLRRQVEE 172
                       44567899******************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSSA  60
GMKRTLSRYN KCLDCSEDAA EECKAEKQDS KELDVLKDEF AKLQKKQVRL LGKDLTGLSL  120
KELQQLEQQL NEGLLSVKER KEQLLVEQLE QSRVQEQRAI LENETLRRQV EELRCLFPQT  180
DRPVPSYLEY YPVEKEKSLV NHGVTSPDLV SNFAFENGDS DITLHLGLPS DVYGKRKAPE  240
REAHSNDSGS QLAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-82MIKC_MADS family protein