PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g249840.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 486aa MW: 52431.3 Da PI: 7.7899

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g249840.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	56	76	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F++ +L H+r+H Pd.00g249840.m02 56 CCVCGKNFPSMKSLFGHMRSH 76 9*******************9 PP
2	zf-C2H2	11.5	0.00094	349	361	1	13
EEETTTTEEESSH CS zf-C2H2 1 ykCpdCgksFsrk 13 ykC+ CgksF++ Pd.00g249840.m02 349 YKCSLCGKSFPTA 361 9*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MHVQANRELF QARKNKIQKP TKILKPNNSD VSSSNGGGGF GVEGNSNSNS SMKPDCCVCG 60 KNFPSMKSLF GHMRSHPERE WRGIQPPPTI AKNSSSSTLS DAVPQNNNKA DDHQIDSAAT 120 PVGSNNSAPD LSKTLPGWSL TARRGRKSIG SSGNSESVSG LDLSLGVEEQ MEEAVHDLLM 180 LAQSNPSFYG LSDKGKGAEM CEATNSNFFI TNNSNQADYI KDKNQVIDYE GTSKKRKGTE 240 MCFPSKNMKS EKKWFDEYDS VKGKGVLGIG FGPEKSSVKN FLKLGPMEDN KNNNIEEELS 300 DSQNSESIVL ASMKRRKRRK MKLVDLEGVV GEIIGAQGHH QSLHQKLRYK CSLCGKSFPT 360 AEGGHNLDEA QTTMALDQDH HVAGAGSGSG AGGLGAHQAH HQCKICDKIF PTGQALGGHK 420 RCHWTGPTEQ LLPQSSQAAS PGEASQNAGR KVLNFDLNEL PAMEFEEGTD QYGAAGYATS 480 SHNSVT

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MHVQANRELF QARKNKIQKP TKILKPNNSD VSSSNGGGGF GVEGNSNSNS SMKPDCCVCG  60
KNFPSMKSLF GHMRSHPERE WRGIQPPPTI AKNSSSSTLS DAVPQNNNKA DDHQIDSAAT  120
PVGSNNSAPD LSKTLPGWSL TARRGRKSIG SSGNSESVSG LDLSLGVEEQ MEEAVHDLLM  180
LAQSNPSFYG LSDKGKGAEM CEATNSNFFI TNNSNQADYI KDKNQVIDYE GTSKKRKGTE  240
MCFPSKNMKS EKKWFDEYDS VKGKGVLGIG FGPEKSSVKN FLKLGPMEDN KNNNIEEELS  300
DSQNSESIVL ASMKRRKRRK MKLVDLEGVV GEIIGAQGHH QSLHQKLRYK CSLCGKSFPT  360
AEGGHNLDEA QTTMALDQDH HVAGAGSGSG AGGLGAHQAH HQCKICDKIF PTGQALGGHK  420
RCHWTGPTEQ LLPQSSQAAS PGEASQNAGR KVLNFDLNEL PAMEFEEGTD QYGAAGYATS  480
SHNSVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	234	264	KKRKGTEMCFPSKNMKSEKKWFDEYDSVKGK
2	314	320	KRRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	1e-12	C2H2 family protein