PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g251720.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 720aa MW: 79595.3 Da PI: 6.2163

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g251720.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	298	318	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Pd.00g251720.m01 298 PCPEFRK-GACRQGDACEYAHG 318 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence
MRAPHDGRLF GPFYDVINPT ENSNCFAGET KARVLESIEP LSFVDAFKNY KSLIVWFKEE 60 ELGFLSHSVF CSFYHFSVVR KGEISMCSGS KRKPSSTDLI MEREKQEGMR YSFSILLELS 120 ASDDLDGFKR AVEEEGHDVD EASYWYGRLI GSKKMGFEER TPLMIAAMFG DLIAPAYSST 180 FNSRKKALEV MLKGVPSIDQ PFDFSEQMVY ETEGQEQQEI TTPRASKDGT EKKEYPIDLS 240 LPDIKNGIYS TDEFRMYTFK VKPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP 300 EFRKGACRQG DACEYAHGIF ECWLHPAQYR TRICKDETGC TRRVCFFAHK PEELRPLYAS 360 TGSAVPSPRS FSANASSLDM GSISPLSLNS PSMLIPPAST PPMTPSGASS PRSGNMWQNQ 420 PNIAPPTLQL PGSRLKSTLC ARDMDLDIEL LSLESHRRRQ QRLIDEISGS PSSWNTGLSS 480 PSAFAASGNR TGELNRIGVN PTNLDDIFGS LDPAILPQYN GPASQLHSPT GIQMRQNMNL 540 QPRPSYSASL SSSPVRASPL FGADASSAAA VFSSRSAAFA KRSQSFIERS AGNRNPGFSS 600 PANSGTLMPS NVSDWGSPGG KLDWGMQGEE LNKLRKSASF GFRSSGSSFS NAPTMMPGAA 660 DEPDVSWVQS LVKDAPPPSQ LGQFGFEDQQ QPQCHPNNGG PEMLPAWVEQ LYLEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence

MRAPHDGRLF GPFYDVINPT ENSNCFAGET KARVLESIEP LSFVDAFKNY KSLIVWFKEE  60
ELGFLSHSVF CSFYHFSVVR KGEISMCSGS KRKPSSTDLI MEREKQEGMR YSFSILLELS  120
ASDDLDGFKR AVEEEGHDVD EASYWYGRLI GSKKMGFEER TPLMIAAMFG DLIAPAYSST  180
FNSRKKALEV MLKGVPSIDQ PFDFSEQMVY ETEGQEQQEI TTPRASKDGT EKKEYPIDLS  240
LPDIKNGIYS TDEFRMYTFK VKPCSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP  300
EFRKGACRQG DACEYAHGIF ECWLHPAQYR TRICKDETGC TRRVCFFAHK PEELRPLYAS  360
TGSAVPSPRS FSANASSLDM GSISPLSLNS PSMLIPPAST PPMTPSGASS PRSGNMWQNQ  420
PNIAPPTLQL PGSRLKSTLC ARDMDLDIEL LSLESHRRRQ QRLIDEISGS PSSWNTGLSS  480
PSAFAASGNR TGELNRIGVN PTNLDDIFGS LDPAILPQYN GPASQLHSPT GIQMRQNMNL  540
QPRPSYSASL SSSPVRASPL FGADASSAAA VFSSRSAAFA KRSQSFIERS AGNRNPGFSS  600
PANSGTLMPS NVSDWGSPGG KLDWGMQGEE LNKLRKSASF GFRSSGSSFS NAPTMMPGAA  660
DEPDVSWVQS LVKDAPPPSQ LGQFGFEDQQ QPQCHPNNGG PEMLPAWVEQ LYLEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-138	C3H family protein