PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g263390.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 259aa    MW: 29715.7 Da    PI: 9.606
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g263390.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.82.2e-312574150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Pd.00g263390.m01 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74
                      79***********************************************8 PP
2K-box116.13.2e-3894187698
             K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       ++  ++ea ++++qqe+akL+ +i nLq++ Rh++Ge+L+s+++k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k
  Pd.00g263390.m01  94 NTGsVSEASTQYYQQEAAKLRTQIGNLQNSSRHMMGESLSSMNMKDLKNLESKLEKGINRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 186
                       333599*************************************************************************************99 PP

             K-box  98 l 98 
                       +
  Pd.00g263390.m01 187 V 187
                       7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MAYENKSMSL DSPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSNRGRL YEYANNSVKE TIERYKKACA ESTNTGSVSE ASTQYYQQEA AKLRTQIGNL  120
QNSSRHMMGE SLSSMNMKDL KNLESKLEKG INRIRSKKNE LLFAEIEYMQ KREIDLHNNN  180
QLLRAKVIPL SLSSSLEKYA CDIAENERSQ QNINVMAGGG SYEIMQSQPY DSRTYFQVNA  240
LQPNHQYNSR QDPMALQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-120MIKC_MADS family protein