PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g270670.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 436aa MW: 48286.5 Da PI: 4.2116

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g270670.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	50.7	5.3e-16	6	80	27	101
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +f +h +FGa++++++l+ lp +e+ a ++++eA+ara dP+yGa++ il+lq+q+ + +a+l++++e+l Pd.00g270670.m01 6 ITDFSSIHNVFGANKMSRILSMLPMSEHAVASWTMTFEAHARAVDPIYGATSYILDLQEQVLNIQAQLDEAHEQL 80 57899*****************************************************************99985 PP
2	DUF260	54.8	2.8e-17	170	243	28	101
DUF260 28 kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +f +h +FGas+++++l++lp +er a +++++A+ara dP yG+v+ il+lq+q+ + +a+l++++e+l Pd.00g270670.m01 170 TDFSSIHNVFGASKMTRILSTLPMSERAVASWTMTFKAHARAVDPTYGCVSYILDLQEQVLNIQAQLDEAHEQL 243 7899*****************************************************************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MHEEAITDFS SIHNVFGANK MSRILSMLPM SEHAVASWTM TFEAHARAVD PIYGATSYIL 60 DLQEQVLNIQ AQLDEAHEQL ACAIAPVADP NQDLENSIEQ SEVANPTEQA AVAKPTEFES 120 LPQFSFTHTN NVYNENMNLN YHVSGSYKNS VNIPTENVAD GWVNNEEAIT DFSSIHNVFG 180 ASKMTRILST LPMSERAVAS WTMTFKAHAR AVDPTYGCVS YILDLQEQVL NIQAQLDEAH 240 EQLAHAVAPV ANPNQDMENS NEQSEVANPT EQAAVAKPTE FESLPQFSFT HTNNVDNENM 300 NLNYHVSGSY KNTVNIPTEN VADGWVNNEA SWLVKVPDMG KVQALTASTP AADEVLEKCQ 360 LRDAIREKEE GLDILDCTVI TVAHRIPTVM DCTKVLAISD EYDEPMKLMN NEGSLFGQLV 420 KEYWSRSANA RVSSDD

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MHEEAITDFS SIHNVFGANK MSRILSMLPM SEHAVASWTM TFEAHARAVD PIYGATSYIL  60
DLQEQVLNIQ AQLDEAHEQL ACAIAPVADP NQDLENSIEQ SEVANPTEQA AVAKPTEFES  120
LPQFSFTHTN NVYNENMNLN YHVSGSYKNS VNIPTENVAD GWVNNEEAIT DFSSIHNVFG  180
ASKMTRILST LPMSERAVAS WTMTFKAHAR AVDPTYGCVS YILDLQEQVL NIQAQLDEAH  240
EQLAHAVAPV ANPNQDMENS NEQSEVANPT EQAAVAKPTE FESLPQFSFT HTNNVDNENM  300
NLNYHVSGSY KNTVNIPTEN VADGWVNNEA SWLVKVPDMG KVQALTASTP AADEVLEKCQ  360
LRDAIREKEE GLDILDCTVI TVAHRIPTVM DCTKVLAISD EYDEPMKLMN NEGSLFGQLV  420
KEYWSRSANA RVSSDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	1e-21	LBD family protein