PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g277900.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 259aa MW: 29225.7 Da PI: 8.8813

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g277900.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	8e-05	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H Pd.00g277900.m01 127 YKCETCNKVFKSYQALGGHRASH 149 9************9999998887 PP
2	zf-C2H2	12	0.00063	182	204	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H Pd.00g277900.m01 182 HECPVCFRVFSSGQALGGHKRSH 204 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MFYGLRENPK RSIRLVDPEF SFAVDAGSVV LQDRESETES SKNPTRRRSK RTRKSAMLEL 60 HHQYQQHHQK LEALKKIKLK NKVISSSKTD SFEPEPDDEA ERSMEDSDES EEQLVKFPRT 120 RTTRGKYKCE TCNKVFKSYQ ALGGHRASHK KIKASNPNPI YEHELEQQNN AGASSVAERK 180 THECPVCFRV FSSGQALGGH KRSHVTGSAA AAATHVKNLN KLGDNLIDLN LPAPVEDDEI 240 SQIELSAVSD AEFVNPIRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	8e-40	C2H2 family protein