PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g279010.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 139aa    MW: 15925.5 Da    PI: 10.1209
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g279010.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.68.6e-334986100
            DUF260   6 kvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                       +++rrkC   C +apyfpa++ ++f+n+h++FG+sn++k+++ + +++r++a++s++ e++ar +dPv+G++g+i++l+ q++ l+ el  +k
  Pd.00g279010.m01   4 RHQRRKCDGTCEMAPYFPASRYSEFQNAHRIFGVSNIQKIMAMAAPDQRQAAAESILTEGNARKNDPVRGCLGIIRSLNAQIQGLERELRIMK 96 
                       8****************************************************************************************9999 PP

            DUF260  99 ee 100
                       ++
  Pd.00g279010.m01  97 QH 98 
                       87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MENRHQRRKC DGTCEMAPYF PASRYSEFQN AHRIFGVSNI QKIMAMAAPD QRQAAAESIL  60
TEGNARKNDP VRGCLGIIRS LNAQIQGLER ELRIMKQHLE LCKEKEELVG KKKTNQKKKT  120
CSMINLMVSI SHHQSSLIW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-26LBD family protein