PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g279030.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 949aa MW: 105355 Da PI: 5.4421

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g279030.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	78.9	8.8e-25	1	83	18	100
DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +apyfpa++ ++f+n+hk+FG+sn++++++ + +++r++a++s++ e++ar +dPv+G++g+i++l+ q++ l+ el+ +k++ Pd.00g279030.m01 1 MAPYFPASRYSEFQNAHKIFGVSNIQNIMAMAAPDQRQAAAESILTEGNARKNDPVRGCLGIIRSLNAQIQGLERELHIMKQH 83 59****************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 949 aa Download sequence
MAPYFPASRY SEFQNAHKIF GVSNIQNIMA MAAPDQRQAA AESILTEGNA RKNDPVRGCL 60 GIIRSLNAQI QGLERELHIM KQHLELRKEK EELRLPETPK ALALSLSLAH RDLRLSVDCF 120 RDLRFCKDER ALVCFGDKQR FIGTAGAASS LMNPKNTISQ IKRLVGRQFS DPVVQRDIKS 180 LPFAVTEGPD GYPLIHARYL GESRTFTPTQ VLGMLFSDLK IIAEKNLNAA VVDCCIGIPV 240 YFTDLQRRAV LDAATIAGLH PLRLFHETTA TALAYGIYKT DLPENDQLNV AFVDIGHASM 300 QVCIAGFKKG QLKILAHSFD QSLGGRDFDE VLFHHFAAKF KEEYKIDVFQ NARACLRLRV 360 ACEKLKKMLS ANPEAPLNIE CLMEEKDVRG FIKRDEFEQI SVPILERVKG PLEKALLDAQ 420 LSIENIHTVE VVGSGSRVPA IIKILTDFFK KEPRRTMNAS ECVARGCALQ CAILSPTFKV 480 REFQVNESFP FSIALSWKGS GPDTQNGAAD NNQSTIVFPK GNPIPSIKAL TFYRSGTFSV 540 DVQYADVSDL QAPAKISTYT IGPFQSTKGE RAKLKVKARL NLHGIVSVDS ATLLEEEEIE 600 VPVTKEQPKE GAKMETDEAP SNAAPPSSNE TDVNMQDAKG TADASGAENG VPESGDKPVQ 660 METDTKADAP KRKVKKTIIP VVELVYGGMP PSDVQKAIEK EFEMALQDRV MEETKDKKNA 720 VEAYVYDTRN KLNDKYQEFV TEPEREAFIA RLQEVEDWLY EDGEDETKGV YIAKLEELKK 780 QGDPIEERYK EHTERGTVID QLGYCINSYR EAAMSTDAKF EHIDISDKQK VLNECVEAEA 840 WLREKKQQQD SLPKYANPVL LSADVRRKAE ALDRFCRPIM TKPKPAPAKP AAPETPTPPP 900 QGNEHQPQGG DANANAGSNE NPADGSNEVP LASEEPMETD KPEAPQSSA

Sequence ? help Back to Top

Protein Sequence Length: 949 aa Download sequence

MAPYFPASRY SEFQNAHKIF GVSNIQNIMA MAAPDQRQAA AESILTEGNA RKNDPVRGCL  60
GIIRSLNAQI QGLERELHIM KQHLELRKEK EELRLPETPK ALALSLSLAH RDLRLSVDCF  120
RDLRFCKDER ALVCFGDKQR FIGTAGAASS LMNPKNTISQ IKRLVGRQFS DPVVQRDIKS  180
LPFAVTEGPD GYPLIHARYL GESRTFTPTQ VLGMLFSDLK IIAEKNLNAA VVDCCIGIPV  240
YFTDLQRRAV LDAATIAGLH PLRLFHETTA TALAYGIYKT DLPENDQLNV AFVDIGHASM  300
QVCIAGFKKG QLKILAHSFD QSLGGRDFDE VLFHHFAAKF KEEYKIDVFQ NARACLRLRV  360
ACEKLKKMLS ANPEAPLNIE CLMEEKDVRG FIKRDEFEQI SVPILERVKG PLEKALLDAQ  420
LSIENIHTVE VVGSGSRVPA IIKILTDFFK KEPRRTMNAS ECVARGCALQ CAILSPTFKV  480
REFQVNESFP FSIALSWKGS GPDTQNGAAD NNQSTIVFPK GNPIPSIKAL TFYRSGTFSV  540
DVQYADVSDL QAPAKISTYT IGPFQSTKGE RAKLKVKARL NLHGIVSVDS ATLLEEEEIE  600
VPVTKEQPKE GAKMETDEAP SNAAPPSSNE TDVNMQDAKG TADASGAENG VPESGDKPVQ  660
METDTKADAP KRKVKKTIIP VVELVYGGMP PSDVQKAIEK EFEMALQDRV MEETKDKKNA  720
VEAYVYDTRN KLNDKYQEFV TEPEREAFIA RLQEVEDWLY EDGEDETKGV YIAKLEELKK  780
QGDPIEERYK EHTERGTVID QLGYCINSYR EAAMSTDAKF EHIDISDKQK VLNECVEAEA  840
WLREKKQQQD SLPKYANPVL LSADVRRKAE ALDRFCRPIM TKPKPAPAKP AAPETPTPPP  900
QGNEHQPQGG DANANAGSNE NPADGSNEVP LASEEPMETD KPEAPQSSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	8e-17	LBD family protein