PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g283550.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GeBP

Protein Properties

Length: 616aa MW: 68028.8 Da PI: 6.1654

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g283550.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	87	2.5e-27	330	430	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkif 89 +r+ws+eDe+ lL+ l+d ++g+ ++d+ fye vk +++++ ++ q+veK+rrLKkK+++ v+k ++gke++f+++hd+ +f Pd.00g283550.m01 330 RKRVWSKEDELELLRSLLDDYYSRGQirTTVKDTASFYEEVKPKLKLECNRVQMVEKLRRLKKKYHNVVNKmndmNSTGKEFRFKNPHDKVVF 422 58***************9999999877888********************************9998887789*********** PP DUF573 90 elskkiWg 97 els kiW+ Pd.00g283550.m01 423 ELSDKIWN 430 *****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MDGPPKLNGI GFNDNPPNPL ADPPPIALLN NSLNNGDKQL FTVSSINPRW LNETSTGRWR 60 FFFSSKLRSR ALARSRRGLL IAGETSSLLV LNLIIVEIGI VRVRARIFIV QGVIVRADTA 120 DIAPDLAGDL ERGLIVRAFE ANLFAACDFV EDVPVLLLQP PELLDELVLV EVKLELGLDL 180 VVEQGGVVLA VVRAFVASHR RVVEEALQEL DLVLVGPQPL EESPRVVERR RLLLFGLGGQ 240 NGVSFGIGGQ YGVVGDYGSY GGGRSGQSQG RGVPSGQGDG DGGSSDGDGE RVGGAGGRVS 300 EPGAKRRRID RTYEPALTSE APEENKKRRR KRVWSKEDEL ELLRSLLDDY YSRGQIRTTV 360 KDTASFYEEV KPKLKLECNR VQMVEKLRRL KKKYHNVVNK MNDMNSTGKE FRFKNPHDKV 420 VFELSDKIWN VVDSHEDYAP NSKYVSICNN VKVKKEEDNA GSSSVADHEQ PQMRHAWSHS 480 RLTTTYDENN KAHDVLNDNG TTSSLDINNN NNNVDDNMKN DIPGSCGYKY DEAVGDPSYP 540 IPPGLQFDKL PEDWRCPTCG AAQSFFVSKS VEIAGFAQNQ QFGLGGNTLT SGQKAVLIFG 600 GLFLFFVLFL SGYFLQ

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MDGPPKLNGI GFNDNPPNPL ADPPPIALLN NSLNNGDKQL FTVSSINPRW LNETSTGRWR  60
FFFSSKLRSR ALARSRRGLL IAGETSSLLV LNLIIVEIGI VRVRARIFIV QGVIVRADTA  120
DIAPDLAGDL ERGLIVRAFE ANLFAACDFV EDVPVLLLQP PELLDELVLV EVKLELGLDL  180
VVEQGGVVLA VVRAFVASHR RVVEEALQEL DLVLVGPQPL EESPRVVERR RLLLFGLGGQ  240
NGVSFGIGGQ YGVVGDYGSY GGGRSGQSQG RGVPSGQGDG DGGSSDGDGE RVGGAGGRVS  300
EPGAKRRRID RTYEPALTSE APEENKKRRR KRVWSKEDEL ELLRSLLDDY YSRGQIRTTV  360
KDTASFYEEV KPKLKLECNR VQMVEKLRRL KKKYHNVVNK MNDMNSTGKE FRFKNPHDKV  420
VFELSDKIWN VVDSHEDYAP NSKYVSICNN VKVKKEEDNA GSSSVADHEQ PQMRHAWSHS  480
RLTTTYDENN KAHDVLNDNG TTSSLDINNN NNNVDDNMKN DIPGSCGYKY DEAVGDPSYP  540
IPPGLQFDKL PEDWRCPTCG AAQSFFVSKS VEIAGFAQNQ QFGLGGNTLT SGQKAVLIFG  600
GLFLFFVLFL SGYFLQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	305	309	KRRRI
2	305	331	KRRRIDRTYEPALTSEAPEENKKRRRK
3	325	332	NKKRRRKR
4	326	331	KKRRRK
5	326	332	KKRRRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	7e-20	GeBP family protein