PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g284780.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 215aa    MW: 24196.3 Da    PI: 6.6117
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g284780.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000243456123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C  C++ F++   L  H++ H
  Pd.00g284780.m01 34 YECVFCKRGFTTAQALGGHMNIH 56
                      99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MEHHDHQVSK SSSTDEEADQ RSDANDGVGT GRSYECVFCK RGFTTAQALG GHMNIHRRER  60
APKTRPNSAP NLSSSISKSV DDHNHPGLRS YREIQSYPPH YSTAPDHDQV VVDHHVNYRT  120
FMPAPTGSWV VRPSPHANYV SEEDLCARNY IPRHRNLLTD DHRDWRSGSS LSLGIGRPSH  180
DLDNNKDRVA NGAGSDEELD LELRLGHDPL YNIKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.16e-14C2H2 family protein