PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g284810.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 946aa MW: 106718 Da PI: 8.6609

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g284810.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79.3	6.4e-25	778	852	27	101
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++k++l Pd.00g284810.m01 778 PARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACLQAQLMQVKAQL 852 689*****************************************************************9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence
MANPQPPKPW KVEYAKSSRS SCKTCKSPIE KEKLRLGKMV TATQFDGFMP MWNHADCIMK 60 KAKQIKSTDD VEGLELLRWE DQKEIRNYVQ SGGPPDTITT VTTTSKVSSG IEVSPTSRAT 120 CKSCSQKILK AEVRISTKPE GQGPRGLAWH HANCFMELSP STEVEKLSGW ETLPVADQAA 180 VRALVKKVPS NARGGKKTEE QEDKEFLQQS TPKTSTKRRN DSGGDQQSKV ARLEGDVSTS 240 WDVSARDATD LESKLEAQTK ELWALKDDLK KHVTTAELRE MLEANVQDST GSELDLRERC 300 ADGMMFGALS RCPICSGFLR YSGGMYRCHG YISEWSKCSY STEEPERLKW KWKIPEDTDN 360 QYLNKWFKSQ KVEKPVRILP PSTPNKPSGS QAFNGQSQSS NSENLADLKV AFRGLPQESM 420 EEWSRKIEGV AGLVHSKIKK DTNCLVVSGA LDDKDAEMRK ARRMKLPIVR EDYLVDCFKK 480 QKKLPFDLYK VEVVGEASSM VTVKVKGRSA VHESSGLQDT CHILEDGKSI YNTTLSMSDL 540 STGVNRLVGF DADTDDSLDE KYRKLRCDID PIPHDSEDFR LIKKYLLTTH APTHTDWSLE 600 LEEVFALERE GEFDKFAPYR KKLNNRMLLW HGSRFTNFFG KGIYFADLVS KSAQYCYTDK 660 KNPVGLMLLS EVALGEVHEL KKATYMDKPP KGKHSTKGLG KKIPQESEYV KWKDDVIVPC 720 GKPVPSNIKA SELMYNEYIV YDKAQVKMQF LLKVRFHHKR KIPAGMPQGD KLQQFPGPAR 780 FAAIHKVFGA SNVSKLLLHV PVHDRCEAVV TIAYEAQARI RDPVYGCVAH IFSLQQQVAC 840 LQAQLMQVKA QLAHQSLVDS RNIESTQWPG NVNGVTNFPN YPSYMNPISP QSSLESIDHN 900 CSDIAMNMQE IQSSRDDFSY QACSKRRPYN GDLGELQALA LRMMRN

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence

MANPQPPKPW KVEYAKSSRS SCKTCKSPIE KEKLRLGKMV TATQFDGFMP MWNHADCIMK  60
KAKQIKSTDD VEGLELLRWE DQKEIRNYVQ SGGPPDTITT VTTTSKVSSG IEVSPTSRAT  120
CKSCSQKILK AEVRISTKPE GQGPRGLAWH HANCFMELSP STEVEKLSGW ETLPVADQAA  180
VRALVKKVPS NARGGKKTEE QEDKEFLQQS TPKTSTKRRN DSGGDQQSKV ARLEGDVSTS  240
WDVSARDATD LESKLEAQTK ELWALKDDLK KHVTTAELRE MLEANVQDST GSELDLRERC  300
ADGMMFGALS RCPICSGFLR YSGGMYRCHG YISEWSKCSY STEEPERLKW KWKIPEDTDN  360
QYLNKWFKSQ KVEKPVRILP PSTPNKPSGS QAFNGQSQSS NSENLADLKV AFRGLPQESM  420
EEWSRKIEGV AGLVHSKIKK DTNCLVVSGA LDDKDAEMRK ARRMKLPIVR EDYLVDCFKK  480
QKKLPFDLYK VEVVGEASSM VTVKVKGRSA VHESSGLQDT CHILEDGKSI YNTTLSMSDL  540
STGVNRLVGF DADTDDSLDE KYRKLRCDID PIPHDSEDFR LIKKYLLTTH APTHTDWSLE  600
LEEVFALERE GEFDKFAPYR KKLNNRMLLW HGSRFTNFFG KGIYFADLVS KSAQYCYTDK  660
KNPVGLMLLS EVALGEVHEL KKATYMDKPP KGKHSTKGLG KKIPQESEYV KWKDDVIVPC  720
GKPVPSNIKA SELMYNEYIV YDKAQVKMQF LLKVRFHHKR KIPAGMPQGD KLQQFPGPAR  780
FAAIHKVFGA SNVSKLLLHV PVHDRCEAVV TIAYEAQARI RDPVYGCVAH IFSLQQQVAC  840
LQAQLMQVKA QLAHQSLVDS RNIESTQWPG NVNGVTNFPN YPSYMNPISP QSSLESIDHN  900
CSDIAMNMQE IQSSRDDFSY QACSKRRPYN GDLGELQALA LRMMRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	9e-38	LBD family protein