PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g295600.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 210aa    MW: 23895 Da    PI: 8.4697
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g295600.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-141863247
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                      +ie +    v+fskRr gi KKA+ + +LC+ eva++ifs++gk +
  Pd.00g295600.m01 18 KIEKEDDLLVSFSKRRSGISKKASDMITLCGGEVAIVIFSPSGKPF 63
                      677777778**********************************955 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MASEGKKTRG RQRIEMKKIE KEDDLLVSFS KRRSGISKKA SDMITLCGGE VAIVIFSPSG  60
KPFSFGHPSV DAVIHRFLNQ NPLENNEYTH QIMEVHQKMR IADLIQLFNE LLIQLEALKE  120
RRKLLEKISK TRGNNQEFWW NASLDELDVN ELKQTYASVA ELHMTITNHL KERRNAFDAS  180
SSSDQQTNPN FDTNPSGGLG SYAFPPSYGH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-37M-type_MADS family protein