PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g296780.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 133aa    MW: 14639.8 Da    PI: 8.3759
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g296780.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26057.24.8e-1866124260
            DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamss 60 
                       Ca   ++rrkC + C +apyfpa++ ++f+n+hk+FG+sn++k+++ + +++r++a+++
  Pd.00g296780.m01  66 CARKCMQRRKCDETCEMAPYFPASRYSEFQNAHKIFGVSNIQKIMAMAAPDQRQAAAEA 124
                       888889*************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    
MDARVFRAVV LMSMLVLAIA QADINPSYTN AIPKGNTLGQ ADDASGPSNT NHVVPNGNLI  60
PCGLRCARKC MQRRKCDETC EMAPYFPASR YSEFQNAHKI FGVSNIQKIM AMAAPDQRQA  120
AAEAFSRREC EEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-12LBD family protein