PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g297100.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29286.1 Da    PI: 8.3206
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g297100.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.93.6e-30959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  Pd.00g297100.m01  9 KRIENKINRQVTFSKRRSGLLKKAQEISVLCDAEVALIVFSTKGKLFEYST 59
                      79***********************************************96 PP
2K-box106.23.9e-35781744100
             K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                       ++  +++++ + s++ e+akLk+++e Lqr++ h++GedL+sLslkeLq+LeqqL+++lk+iRs+Kn++++e+i+elqkk k+lqe+n+ L k
  Pd.00g297100.m01  78 KQLLANDHESTGSWTLEHAKLKARVEVLQRNHSHFMGEDLQSLSLKELQNLEQQLDSALKHIRSRKNQVMYESISELQKKDKALQEQNNLLAK 170
                       555556778899********************************************************************************* PP

             K-box  97 klee 100
                       k++e
  Pd.00g297100.m01 171 KVKE 174
                       *986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAQEISVLCD AEVALIVFST KGKLFEYSTD  60
SCMERILERY ERYSYSEKQL LANDHESTGS WTLEHAKLKA RVEVLQRNHS HFMGEDLQSL  120
SLKELQNLEQ QLDSALKHIR SRKNQVMYES ISELQKKDKA LQEQNNLLAK KVKEKEKALA  180
PQAQSWEQQV QNQGLDCSST LLPEALQSLN FCSGSNYQGI RSDGTGGDHE DENETPTANR  240
PNTLLPPWML RHLNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-101MIKC_MADS family protein