PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g300480.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1035aa MW: 112108 Da PI: 8.8616

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g300480.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.9e-12	4	27	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+e+C++f+r G C++GdrCkF H+ Pd.00g300480.m02 4 KREPCKYFQR-GSCQFGDRCKFLHV 27 89******.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1035 aa Download sequence
MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG PQSGSDQQRK SNPYGFGVQN 60 NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS 120 IIIEDNEHES PLWKLTCYGH WKNFPCDIVG DISYEELRAA AYDDAKHGLN MQSIIERERN 180 LLNTKLIEFD KLCKPQGALL KPNHSSQNPF PSASQNAFLQ AANNSAAPSL SSFSQLGTSL 240 NTGFGPRQVS LLIFTLLWPS APSNNGFAQL NPFANSTQTS SGFGTNNFLS GSAGSRGSQF 300 PATAHVNVFP LSTGFGNTGV MRHETNPFST LAVSSQIPSA TTGLPPILSD GPTSASNAVR 360 QSTTEVQFLT NMQREKISGE TSIWLKKIWS PGEIPEEEPP DALVEFQSLE MLRKEGLPPI 420 VRPNIPIIFC NICKGFCIYL MLYTVPVKSA ATSSTSSGEG SLGVVKVDPT LNFENPRLRQ 480 AYIALQAWKA AIFSDPFNFT SSWNGSDVCS YMGVFCAPMS TGAHGRVVAG IDLNHADIAG 540 YLPPELGLLS DLALFHLNSN RFCGVVPSSL RRMKLLHELD LSNNRFVGDF PKVVFSLPSL 600 KYLDLRFNEF EGSVPSQLFD KDLDALFLND NRFQFGIPPN LGNSPVSVLV LANNNLGGCI 660 PGSIGNMAKT LNEIILSNDN LTGCLPPQIG LLTNLTVFDV SFNRLQGPLP STIGKNMKSL 720 EELDVACNRL AGVIPASICQ LPRLHNFTYS FNYFTGEAPA CAANKNNING RKNCIRGKLD 780 QRSARECASP AARPVDCRKL QCSSTTSPGG GGGSGGGSKR RPPPPSAPVG NKPPAQRRPP 840 RVSTPPPPTS ESSPSTRSHP PPPSNPSSSS SSPPLVPNRA PPPSNSNSHS HSPAKPPPLT 900 QRVSPRTHLP PSPPPSRSHH HWTLTPPPPP TQNVSPTTHL RPPPPPLPTH YNSSSSPPPP 960 VLYHASPPDH SKHDLVSPSP PNQHHHSPPE QQHWHQPPPS SHQQFPPPSP LDSTPLPPVI 1020 GVSYASPPPP VVPYY

Sequence ? help Back to Top

Protein Sequence Length: 1035 aa Download sequence

MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG PQSGSDQQRK SNPYGFGVQN  60
NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS  120
IIIEDNEHES PLWKLTCYGH WKNFPCDIVG DISYEELRAA AYDDAKHGLN MQSIIERERN  180
LLNTKLIEFD KLCKPQGALL KPNHSSQNPF PSASQNAFLQ AANNSAAPSL SSFSQLGTSL  240
NTGFGPRQVS LLIFTLLWPS APSNNGFAQL NPFANSTQTS SGFGTNNFLS GSAGSRGSQF  300
PATAHVNVFP LSTGFGNTGV MRHETNPFST LAVSSQIPSA TTGLPPILSD GPTSASNAVR  360
QSTTEVQFLT NMQREKISGE TSIWLKKIWS PGEIPEEEPP DALVEFQSLE MLRKEGLPPI  420
VRPNIPIIFC NICKGFCIYL MLYTVPVKSA ATSSTSSGEG SLGVVKVDPT LNFENPRLRQ  480
AYIALQAWKA AIFSDPFNFT SSWNGSDVCS YMGVFCAPMS TGAHGRVVAG IDLNHADIAG  540
YLPPELGLLS DLALFHLNSN RFCGVVPSSL RRMKLLHELD LSNNRFVGDF PKVVFSLPSL  600
KYLDLRFNEF EGSVPSQLFD KDLDALFLND NRFQFGIPPN LGNSPVSVLV LANNNLGGCI  660
PGSIGNMAKT LNEIILSNDN LTGCLPPQIG LLTNLTVFDV SFNRLQGPLP STIGKNMKSL  720
EELDVACNRL AGVIPASICQ LPRLHNFTYS FNYFTGEAPA CAANKNNING RKNCIRGKLD  780
QRSARECASP AARPVDCRKL QCSSTTSPGG GGGSGGGSKR RPPPPSAPVG NKPPAQRRPP  840
RVSTPPPPTS ESSPSTRSHP PPPSNPSSSS SSPPLVPNRA PPPSNSNSHS HSPAKPPPLT  900
QRVSPRTHLP PSPPPSRSHH HWTLTPPPPP TQNVSPTTHL RPPPPPLPTH YNSSSSPPPP  960
VLYHASPPDH SKHDLVSPSP PNQHHHSPPE QQHWHQPPPS SHQQFPPPSP LDSTPLPPVI  1020
GVSYASPPPP VVPYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.1	2e-58	C3H family protein