PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g306890.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 396aa MW: 45776.7 Da PI: 5.7017

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g306890.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.4	1e-22	60	142	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+v+++eleHnH ++ Pd.00g306890.m01 60 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDSNRWRVIEVELEHNHLIS 142 9*************99997.66779**********99888.....*********************************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MDEVSLNTEP AGDDDADEFE IEGDCAMTDF ISQTGIIQGE NPLPPVVGME FDSYEDVYYF 60 YNCYAKQQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF 120 RLMDSNRWRV IEVELEHNHL ISPASGKFYK SHKSVGVGTK RALQLDTAEE VQKIRLFRTV 180 IIDSEDKYDQ ALQTHHRLEA LADLDSRNSS YMLKSRCYFE LQLSKVYTND ILRKFESEVE 240 GMYSCFSTSQ LNPDGPVITY IVKEQTEVDG NRREVRDYEV LYNPSEMEVL CICGMFNLRG 300 YLCRHTLSVL NQNGVEEIPA QYVLSRWRKD IKRNYIFDHS CSGIDINNPV HRYDHLYKCI 360 VQVVEEGRKS QDRYKVAFGA LDEILNKLCL TEDPAL

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MDEVSLNTEP AGDDDADEFE IEGDCAMTDF ISQTGIIQGE NPLPPVVGME FDSYEDVYYF  60
YNCYAKQQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMDSNRWRV IEVELEHNHL ISPASGKFYK SHKSVGVGTK RALQLDTAEE VQKIRLFRTV  180
IIDSEDKYDQ ALQTHHRLEA LADLDSRNSS YMLKSRCYFE LQLSKVYTND ILRKFESEVE  240
GMYSCFSTSQ LNPDGPVITY IVKEQTEVDG NRREVRDYEV LYNPSEMEVL CICGMFNLRG  300
YLCRHTLSVL NQNGVEEIPA QYVLSRWRKD IKRNYIFDHS CSGIDINNPV HRYDHLYKCI  360
VQVVEEGRKS QDRYKVAFGA LDEILNKLCL TEDPAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	3e-66	FAR1 family protein