PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g307630.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 231aa    MW: 26422.1 Da    PI: 8.3569
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g307630.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-077296126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      +kt+lC++f   G C+yG  C+FaHg
  Pd.00g307630.m01 72 FKTRLCNNFKM-GNCHYGQGCCFAHG 96
                      79*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MSDSGRTCQF FAPYLESGDN RHQLKPEFPN ADKDFKDHSD IESHPSKKPK TSEVVLISTI  60
PMAHNKMLPR NFKTRLCNNF KMGNCHYGQG CCFAHGISDL RKTWLNWQGL ETEEGFKART  120
CDHRRTSNDM LNIVGCAMIL RKLNSESYHC FTELMKLCGY MAVQSRSVQN SRTSSTSMSK  180
LRMGVGATYH KQVPGMECDF KWNELEKMSR IYADWIEDIP LVHGSSSKAE C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-08C3H family protein