PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g311950.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 402aa    MW: 45117.8 Da    PI: 8.6428
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g311950.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.4e-07220242123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C+ Cgk F+r  nL+ H+r H
  Pd.00g311950.m01 220 HYCQVCGKGFKRDANLRMHMRAH 242
                       68*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    
MPQQQEDEHQ GLQIFSMTED PQVSSFSTSS GPENHSTSLL YSLSVLKEKV RQAKSLFSIL  60
ISPDHHHHQS QPPESTSMAI ASMNNVIQEI IVTASSMMFT CQQMALVSSP PPPGNNNPTS  120
TSNTIDHEEQ LLHHQGLNKP PPPPRFSQPN FGSGLDNKIE TPFYPTNDDQ ALDWFSDSYM  180
DCTTRDTKTR HVQGKQQPIS PKSFDIIELE AADLLAKYTH YCQVCGKGFK RDANLRMHMR  240
AHGDEYKTTV ALSNPMKKNN STSNNNNNHG AGGTDGNTDC STNLPRKYSC PQVGCRWNQK  300
HAKFQPLKSM ICVKNHYKRS HCPKMYVCKR CNRKQFSVLS DLRTHEKHCG DLRWQCSCGT  360
TFSRKDKLMG HVALFTGHTP VVISSLASRL GKVDQRSHGS QM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-105C2H2 family protein