PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g313080.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 881aa MW: 102795 Da PI: 7.0925

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g313080.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.2e-06	126	145	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H Pd.00g313080.m01 126 CPFHLKTGACRFGQRCSRVH 145 ******************99 PP
2	zf-CCCH	24.5	4.7e-08	255	282	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ Pd.00g313080.m01 255 WKVAICGEYMKSRykTCSHGTACNFIHC 282 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence
MQIASLINPF CGAVVLVYGM QDVSAVENEN DGNEVDDWDY IEEGPAEIIW QGNEIIVKKK 60 RIKVPKRNTE QQSRKEDCDR PTSNPLPPQS EAFSDYKNSS MSAQQLIENV AQQVPHFGTE 120 QDKAHCPFHL KTGACRFGQR CSRVHFYPDK SSTLLIKNMY NGPGLAWEQD EVLEHTDEEV 180 EHCYEEFYED VHTEFLKFGE IINFKVCRNG AFHLRGNVYI HYKSLDSAVL AHQSINGRYF 240 AGKQISCEFI NVTRWKVAIC GEYMKSRYKT CSHGTACNFI HCFHNPGGDY EWADSDRPAP 300 KYWVRKMVAL FGYSDADEKQ MVEENFGQLR NSSKMTMADS ERYGLRRSRS RARDYSSFVG 360 SGRRYDSEDY VLKDAERQRH TGDDRHRGKT LDEDRCEENK NLKDYHCRKS RRSDTEFDRQ 420 LLDREEDRDR HHGHTRKSSR QQNRDHKNKT YENESDGDLS DRARNRVAQH GCTRESSSQQ 480 RKGEFLDEYG DWQNKNHEVD RDWSDRDKDR DAYHDNRKSS GHKRKVGCPD NHNDSKNRAH 540 DMDEEWSDSN RKGGKHHSRR KRFGHISKAS EFLNHRGRTT RSCSYELSDD LLENDAERNL 600 SHARKRSKCL DEVSDISDED RFPTQNLEHR HDRLSLEMRE AGALVKKLKS DGTHESSSLG 660 QDGERYRSHD FDIRYISDVH MDKQDRWEPE DGSVEIFHNS KTKAGSSESY ESGRPGPYNV 720 RGESSDFDSE DKVGQEDQYE SDKVAHSKHR KSRRKSTHDD RKRDSENRSL CSSQSSHRRH 780 SNRLEATDSS EDNNESGRKH NQKHHADHRS RDHKRDHKSR RYVTSDDVVE FNGVFKDIKV 840 EEMVSLLSCF VWQGKNLTCS FQSQDTARRV AEVQLECKVK K

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence

MQIASLINPF CGAVVLVYGM QDVSAVENEN DGNEVDDWDY IEEGPAEIIW QGNEIIVKKK  60
RIKVPKRNTE QQSRKEDCDR PTSNPLPPQS EAFSDYKNSS MSAQQLIENV AQQVPHFGTE  120
QDKAHCPFHL KTGACRFGQR CSRVHFYPDK SSTLLIKNMY NGPGLAWEQD EVLEHTDEEV  180
EHCYEEFYED VHTEFLKFGE IINFKVCRNG AFHLRGNVYI HYKSLDSAVL AHQSINGRYF  240
AGKQISCEFI NVTRWKVAIC GEYMKSRYKT CSHGTACNFI HCFHNPGGDY EWADSDRPAP  300
KYWVRKMVAL FGYSDADEKQ MVEENFGQLR NSSKMTMADS ERYGLRRSRS RARDYSSFVG  360
SGRRYDSEDY VLKDAERQRH TGDDRHRGKT LDEDRCEENK NLKDYHCRKS RRSDTEFDRQ  420
LLDREEDRDR HHGHTRKSSR QQNRDHKNKT YENESDGDLS DRARNRVAQH GCTRESSSQQ  480
RKGEFLDEYG DWQNKNHEVD RDWSDRDKDR DAYHDNRKSS GHKRKVGCPD NHNDSKNRAH  540
DMDEEWSDSN RKGGKHHSRR KRFGHISKAS EFLNHRGRTT RSCSYELSDD LLENDAERNL  600
SHARKRSKCL DEVSDISDED RFPTQNLEHR HDRLSLEMRE AGALVKKLKS DGTHESSSLG  660
QDGERYRSHD FDIRYISDVH MDKQDRWEPE DGSVEIFHNS KTKAGSSESY ESGRPGPYNV  720
RGESSDFDSE DKVGQEDQYE SDKVAHSKHR KSRRKSTHDD RKRDSENRSL CSSQSSHRRH  780
SNRLEATDSS EDNNESGRKH NQKHHADHRS RDHKRDHKSR RYVTSDDVVE FNGVFKDIKV  840
EEMVSLLSCF VWQGKNLTCS FQSQDTARRV AEVQLECKVK K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-147	C3H family protein