PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g317420.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 618aa    MW: 67392.7 Da    PI: 8.2934
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g317420.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.21.8e-1042476182374
              GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                       ++ L+e+A+a+s+g+ e+a ++L+rl +    +p+ ++ qRl  ++t AL++r++     + +  p++e     s+e++ +++l++e+sP+++
  Pd.00g317420.m01 247 KQSLMEAATAISEGKSEAAAEILTRLTTSqvPNPRPNSEQRLLEVMTSALKSRVNP----VDNPPPVTE---LFSQEHAGSTQLLYELSPCFR 332
                       578**********************988744677779******************9....443333333...3499***************** PP

              GRAS  93 fshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                       f++++aN aIlea+ ++    ++vH+iDfdi+qG+Q++ LlqaL +R +g p +++iT+v++  +g +++l  ++++L+k+A++ gv +efn+
  Pd.00g317420.m01 333 FGFMAANLAILEATLTDksatNKVHVIDFDIGQGGQYVLLLQALYARLNGLPaTVKITTVAD--NGGEDRLTMVRQNLSKVAKQHGVVLEFNI 423
                       *************9777678899*************************88776*********..77**************************9 PP

              GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                        v+++l++l+ e+L ++p+E +aVn++++l++++desvs++++rde+L+ vk+lsP+vv++veqe+++n+++F++r+ e++ yy al++s+++
  Pd.00g317420.m01 424 -VSQKLAELNRESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLSPRVVTLVEQELNTNTAPFMARVKETCGYYGALLESMKS 515
                       .8*****************************************************************************************98 PP

              GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslvlgWk 363
                       + + +++er+k E++ l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  p+s+++++  k  l+  +   + g++v+ee+g +++gW 
  Pd.00g317420.m01 516 TEAGDNSERVKAEEA-LSRKLINSVACEGRDRVERCEVFGKWRARMGMAGFELRPMSQNMTEVLKQRLSSGNnrvNSGFTVKEENGGVCFGWI 607
                       88999**********.*******************************************9999988886544235789*************** PP

              GRAS 364 drpLvsvSaWr 374
                       +r+L+++SaWr
  Pd.00g317420.m01 608 SRTLTVASAWR 618
                       **********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    
MQSGFTGGAG AGGVPDFYSG GRSISIATAM NNHHQHPSQP PYHRSSLPGL FLDNPSSQIA  60
RQTQSQSQFQ TQNPSTLIGK RTLAEFQAHQ QHHHYHNPNP NLYLRSLKPR TFQHSSPISP  120
LSPIDFSSSS TITGSDSSSS ASSLLSHQRF GLPLLQQLRP QPVHQTLPPA GSFVNNNPVQ  180
NQTWVVSGVD SEKKMISNRL QDEWSETIQN LIGPGPGQSQ KPLSPSPTSS SSSSSSVASP  240
ASSTCSKQSL MEAATAISEG KSEAAAEILT RLTTSQVPNP RPNSEQRLLE VMTSALKSRV  300
NPVDNPPPVT ELFSQEHAGS TQLLYELSPC FRFGFMAANL AILEATLTDK SATNKVHVID  360
FDIGQGGQYV LLLQALYARL NGLPATVKIT TVADNGGEDR LTMVRQNLSK VAKQHGVVLE  420
FNIVSQKLAE LNRESLGCEP DEPIAVNFAF KLYSMPDESV STDNPRDELL RRVKGLSPRV  480
VTLVEQELNT NTAPFMARVK ETCGYYGALL ESMKSTEAGD NSERVKAEEA LSRKLINSVA  540
CEGRDRVERC EVFGKWRARM GMAGFELRPM SQNMTEVLKQ RLSSGNNRVN SGFTVKEENG  600
GVCFGWISRT LTVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-154GRAS family protein