PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g317680.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 1505aa MW: 168147 Da PI: 6.5507

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g317680.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	881	902	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H Pd.00g317680.m01 881 KCDKCPREFCSSINYRRHIRVH 902 7********************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1505 aa Download sequence
MTEFDSLSSL SPEQTDSLAS PGIRNSMRFG DIVRMGSVEE GEEEGRVLNV DETIFVAVGK 60 DVKQSETTLL WAVKNFAGKN ICLLHVHKPS RVLSLSEGNG PASKLKQGAI KVYQALERTK 120 LRKLLDQYLL ILIRAGVQAN EVWIEMQKVE EGIVELIARH NIRWLVMGAA ADEYYSERLA 180 EIKSRKAFFV CNKAASSCHI WFVCKGHLIY TRGDREDESE IEIAPPLLLT SSASGAEQPE 240 HLKSESTHWL INLDAEEDTS ELEEISKRLT PLLIDEEDKA ACESYHLVEP NIVDTNKNSK 300 QKGYEETVKR WKEEDNAMEA KCKAKAFESL CTKEMSKRKE MEEALARVRQ EIDGMKDERN 360 GFIERLQMAQ DNKLALESQL GDSQCMVKQL EEKLLSAVEL LITFKDRRDK LQIEHRDAIT 420 KVKWLRTSIK GEAASFCRAE FPVFSFMEIN KATHNFDQSW KIGEGRYGSV YKGILRHMHV 480 AIKMLPSYGS KTQLDFQDEV EVLSRVRHPN LVTLIGNCPE SRSLVYEYLR NGCLEDRLAC 540 KGNTPPLPWK VRTCIATEIC SALVFLHSNI PCLVHGNVKP SNILFDANFV SKLGDLGIVG 600 LIPQNENPAN FARIHNDPNG TDVYMDPEYL ETGNLTPESD VYSFGIILLQ LLTARPLLGI 660 VKDVKTALEN DNIDALLDIS AGDWPLEQAK ELAYLALRCC EKNRLNRPDL WVVHEAMGAS 720 CAASASCLIS KKLIRTPSHF VCPIFQEVMK DPHIAADGFT YEEEAIRGWL KGGHNTSPMT 780 NLKLEHCNLV PNYALQYAIQ QWQLEMPIAK LKASNTLDAM KSEEGNDSLD TIIRQVAKEP 840 SISFSRAGDS PVPWIQLLHA LDQQELPGWP LHSPIKVQLQ KCDKCPREFC SSINYRRHIR 900 VHHRLKKLDK DSSKNRELLG AFWDKLSPEE AKEAASFKNV TLEEVPGSSI IKALTTHIRK 960 PGFSSMPHIY LKAGSALLDI VQARPSRFPI SSQELFSILD DASEKTFLSG TAISMQRYIF 1020 DGEAGKVGLE SKNLVACTSF LVEQKLVKAW HADKDAEALR LQKLLVDEEE AAQRRQAELM 1080 ERKRQKKLRQ KEQKAKDQRH GVKVDVKENI DETLEAEPLV ETSSPSATFD SDTTSSDLQA 1140 HDSLSLEAFQ LSTADENVDP ESQTEFIHGH TDSVSGPNVE RRMVQGSGCR RAVVARWQVL 1200 SKSQRAVPHG FHGGQSSQTS KLSSIQNHGN HRDSRAASSG NKVWSRKPKP EYDGGSLKAG 1260 VQKEATEPDQ IKNQEVLIGS ISVNLGNCSQ ESDNLAGVDD DCLLEHQIPK NNAHDKTNKP 1320 DLVHSGTNRS TVKLWRPVSR HGTKGPMAIQ NGNRASEIDV VAEEGNSQNP SSENCPRSCV 1380 MDGGNDGNGN GSTRLDETGS LRFSSRAAKD FLAQRWKEAI AADHVELVLL QDSEPPRCPD 1440 NQNDGEVESS HSLKFKRSIL GNAENRLVNV EGLEFPTAGA AKVKHRTKPE KGLKIKYIPK 1500 QSTVT

Sequence ? help Back to Top

Protein Sequence Length: 1505 aa Download sequence

MTEFDSLSSL SPEQTDSLAS PGIRNSMRFG DIVRMGSVEE GEEEGRVLNV DETIFVAVGK  60
DVKQSETTLL WAVKNFAGKN ICLLHVHKPS RVLSLSEGNG PASKLKQGAI KVYQALERTK  120
LRKLLDQYLL ILIRAGVQAN EVWIEMQKVE EGIVELIARH NIRWLVMGAA ADEYYSERLA  180
EIKSRKAFFV CNKAASSCHI WFVCKGHLIY TRGDREDESE IEIAPPLLLT SSASGAEQPE  240
HLKSESTHWL INLDAEEDTS ELEEISKRLT PLLIDEEDKA ACESYHLVEP NIVDTNKNSK  300
QKGYEETVKR WKEEDNAMEA KCKAKAFESL CTKEMSKRKE MEEALARVRQ EIDGMKDERN  360
GFIERLQMAQ DNKLALESQL GDSQCMVKQL EEKLLSAVEL LITFKDRRDK LQIEHRDAIT  420
KVKWLRTSIK GEAASFCRAE FPVFSFMEIN KATHNFDQSW KIGEGRYGSV YKGILRHMHV  480
AIKMLPSYGS KTQLDFQDEV EVLSRVRHPN LVTLIGNCPE SRSLVYEYLR NGCLEDRLAC  540
KGNTPPLPWK VRTCIATEIC SALVFLHSNI PCLVHGNVKP SNILFDANFV SKLGDLGIVG  600
LIPQNENPAN FARIHNDPNG TDVYMDPEYL ETGNLTPESD VYSFGIILLQ LLTARPLLGI  660
VKDVKTALEN DNIDALLDIS AGDWPLEQAK ELAYLALRCC EKNRLNRPDL WVVHEAMGAS  720
CAASASCLIS KKLIRTPSHF VCPIFQEVMK DPHIAADGFT YEEEAIRGWL KGGHNTSPMT  780
NLKLEHCNLV PNYALQYAIQ QWQLEMPIAK LKASNTLDAM KSEEGNDSLD TIIRQVAKEP  840
SISFSRAGDS PVPWIQLLHA LDQQELPGWP LHSPIKVQLQ KCDKCPREFC SSINYRRHIR  900
VHHRLKKLDK DSSKNRELLG AFWDKLSPEE AKEAASFKNV TLEEVPGSSI IKALTTHIRK  960
PGFSSMPHIY LKAGSALLDI VQARPSRFPI SSQELFSILD DASEKTFLSG TAISMQRYIF  1020
DGEAGKVGLE SKNLVACTSF LVEQKLVKAW HADKDAEALR LQKLLVDEEE AAQRRQAELM  1080
ERKRQKKLRQ KEQKAKDQRH GVKVDVKENI DETLEAEPLV ETSSPSATFD SDTTSSDLQA  1140
HDSLSLEAFQ LSTADENVDP ESQTEFIHGH TDSVSGPNVE RRMVQGSGCR RAVVARWQVL  1200
SKSQRAVPHG FHGGQSSQTS KLSSIQNHGN HRDSRAASSG NKVWSRKPKP EYDGGSLKAG  1260
VQKEATEPDQ IKNQEVLIGS ISVNLGNCSQ ESDNLAGVDD DCLLEHQIPK NNAHDKTNKP  1320
DLVHSGTNRS TVKLWRPVSR HGTKGPMAIQ NGNRASEIDV VAEEGNSQNP SSENCPRSCV  1380
MDGGNDGNGN GSTRLDETGS LRFSSRAAKD FLAQRWKEAI AADHVELVLL QDSEPPRCPD  1440
NQNDGEVESS HSLKFKRSIL GNAENRLVNV EGLEFPTAGA AKVKHRTKPE KGLKIKYIPK  1500
QSTVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1081	1088	ERKRQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-130	C2H2 family protein