PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g318540.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 223aa MW: 25459.2 Da PI: 7.5994

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g318540.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	30.6	4.2e-10	43	65	29	51
HHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 29 vLCdaevaviifsstgklyeyss 51 vLCda+v+viifs++g+lye+ss Pd.00g318540.m01 43 VLCDAQVSVIIFSQKGRLYEFSS 65 9********************96 PP
2	K-box	75.7	1.3e-25	86	177	8	98
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + e+ e+l++e++ + k+ienL+ +qR+llG +L+s+s++eLq++ +qLe+s++kiR++K +l+ +q+e+l+ ke+ l een +L++++ Pd.00g318540.m01 86 KiEVEEYVEQLKHESTAMAKKIENLEASQRKLLGHGLDSCSVEELQEITDQLERSVRKIRERKAHLFADQMEQLRAKERLLLEENAKLSQEF 177 3356777899*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MCCPVLISPS HKVVVLHKFL HFSLLASVRA LQIFEGVSRL GHVLCDAQVS VIIFSQKGRL 60 YEFSSSDMQE TIKRYRKHAK AGQTNKIEVE EYVEQLKHES TAMAKKIENL EASQRKLLGH 120 GLDSCSVEEL QEITDQLERS VRKIRERKAH LFADQMEQLR AKERLLLEEN AKLSQEFGAQ 180 PRLLLHQQQL SVEEKGAVSY WSQSSLSSEV ETELFIGPPV TRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.3	3e-56	MIKC_MADS family protein