PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g329870.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 545aa MW: 61242.1 Da PI: 8.062

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g329870.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00057	3	25	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs+ L H+r H Pd.00g329870.m01 3 HRCKLCNKTFSSGKVLGGHMRGH 25 79******************988 PP
2	zf-C2H2	11.3	0.001	80	100	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F + + H+r H Pd.00g329870.m01 80 CKVCGKRFDSMKAMFGHMRHH 100 *******************99 PP
3	zf-C2H2	16.4	2.5e-05	111	131	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+dCgk F + L+ H + H Pd.00g329870.m01 111 CKDCGKAFESLRALTAHTKIH 131 99****************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MEHRCKLCNK TFSSGKVLGG HMRGHGTKNS AKAEKKLKVS NVDFEGDDDE HAGYGLRVNP 60 KKSWKFSGSK VQASEKESLC KVCGKRFDSM KAMFGHMRHH SSRERKETQC CKDCGKAFES 120 LRALTAHTKI HSKRLRTSDG SQSISSEKLF VDFQYSTETM GLIRRKRSKR LRYKITPSSS 180 FYGMNESKYA SEFGQEVVDG AICLMIISRG GINWGRISSV TESSDNNSLS LEVQSPVQKN 240 RIMGNRGGIS VCNDTGNKIF EFGENDSGFA SDEEKTGKLE VPIDRFYRGA ECKRPKLDED 300 SAFVGYDAEI EKESHGEMEA ILTEVTEVEL DVDIIEEEEL DVTKLGSVKS GMKACDSGNN 360 MLYGTESEIF ADSRKKREHK CRTCKKLFRS HQALGGHQRV HKATNNCSGE KIVDSEDKIQ 420 INKLSKIEYS CKLAKLECTD NSELQEMERA TVTGFESKVH RCSICLKVFA TGQALGGHKR 480 VHFGKDSETG TEQTRALKQR ISEICDVFEL SQPVKLEEEN GDVEFKSWWL GNEHKRELLV 540 GLMPN

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MEHRCKLCNK TFSSGKVLGG HMRGHGTKNS AKAEKKLKVS NVDFEGDDDE HAGYGLRVNP  60
KKSWKFSGSK VQASEKESLC KVCGKRFDSM KAMFGHMRHH SSRERKETQC CKDCGKAFES  120
LRALTAHTKI HSKRLRTSDG SQSISSEKLF VDFQYSTETM GLIRRKRSKR LRYKITPSSS  180
FYGMNESKYA SEFGQEVVDG AICLMIISRG GINWGRISSV TESSDNNSLS LEVQSPVQKN  240
RIMGNRGGIS VCNDTGNKIF EFGENDSGFA SDEEKTGKLE VPIDRFYRGA ECKRPKLDED  300
SAFVGYDAEI EKESHGEMEA ILTEVTEVEL DVDIIEEEEL DVTKLGSVKS GMKACDSGNN  360
MLYGTESEIF ADSRKKREHK CRTCKKLFRS HQALGGHQRV HKATNNCSGE KIVDSEDKIQ  420
INKLSKIEYS CKLAKLECTD NSELQEMERA TVTGFESKVH RCSICLKVFA TGQALGGHKR  480
VHFGKDSETG TEQTRALKQR ISEICDVFEL SQPVKLEEEN GDVEFKSWWL GNEHKRELLV  540
GLMPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-18	C2H2 family protein