PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g335870.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 597aa MW: 66292.1 Da PI: 6.8064

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g335870.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.7	1.1e-06	344	365	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H Pd.00g335870.m01 344 FCAICGKGFKRDANLRMHMRGH 365 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MPSPIRLQIS SSSSQIFLTH GRVHVHESCT VTKLINLTAA EKNPPTPTER KTKEHLCSFQ 60 SGAYLIWKMD HKKKLCADAW ENPSSGNDLT SKISSDCPPF ANFKPQLHQQ KWEDPSILDY 120 GGIRIEPSFQ EFNQPSETQT SLPCNSNNDT KMADREDGQM RETPQANKSQ DWDPRTMLNN 180 LSFLEQKIHQ LQDLVHLIVG RRGQVLGRPD ELVAQQQQLI TADLTSIIAH LISTAGSLLP 240 SVKHTLSTTT PSIGKFGQLG GSFVPSGVGT DAPVKLQNSN GSKLADQSNQ TDLISNYGTE 300 QNYSVEEHES KDEEDADEGE NLPPGSYEIL QLEKEEILAP HTHFCAICGK GFKRDANLRM 360 HMRGHGDEYK TPAALAKPNK ESSSEPTLIK RYSCPYAGCK RNKDHKKFQP LKTILCVKNH 420 YKRTHCDKSY TCSRCNTKKF SVIADLKTHE KHCGKDKWLC SCGTTFSRKD KLFGHIALFQ 480 GHTPAIPLDE TKGTLGPTDH GEGSEASNRV GNINFSFGST APGGGDVVQN LMDVKESIND 540 PTSYFSPLNF ETCNFDGFHE FPRPPFEDSE SSFSFLMPGS CNYTHKSGGE PNSNNLE

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MPSPIRLQIS SSSSQIFLTH GRVHVHESCT VTKLINLTAA EKNPPTPTER KTKEHLCSFQ  60
SGAYLIWKMD HKKKLCADAW ENPSSGNDLT SKISSDCPPF ANFKPQLHQQ KWEDPSILDY  120
GGIRIEPSFQ EFNQPSETQT SLPCNSNNDT KMADREDGQM RETPQANKSQ DWDPRTMLNN  180
LSFLEQKIHQ LQDLVHLIVG RRGQVLGRPD ELVAQQQQLI TADLTSIIAH LISTAGSLLP  240
SVKHTLSTTT PSIGKFGQLG GSFVPSGVGT DAPVKLQNSN GSKLADQSNQ TDLISNYGTE  300
QNYSVEEHES KDEEDADEGE NLPPGSYEIL QLEKEEILAP HTHFCAICGK GFKRDANLRM  360
HMRGHGDEYK TPAALAKPNK ESSSEPTLIK RYSCPYAGCK RNKDHKKFQP LKTILCVKNH  420
YKRTHCDKSY TCSRCNTKKF SVIADLKTHE KHCGKDKWLC SCGTTFSRKD KLFGHIALFQ  480
GHTPAIPLDE TKGTLGPTDH GEGSEASNRV GNINFSFGST APGGGDVVQN LMDVKESIND  540
PTSYFSPLNF ETCNFDGFHE FPRPPFEDSE SSFSFLMPGS CNYTHKSGGE PNSNNLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein