PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g339000.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 553aa MW: 61593.9 Da PI: 4.2952

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g339000.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.7	1e-29	8	109	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+l+++C+++C++apyf +e+ +f +h +FGas+++++l+ lp +er a ++++eA+ara dP+yGa++ il+lq+q+ + +a Pd.00g339000.m01 8 PCGACKFLKQRCKRGCIFAPYFMHEEaITDFSSIHNVFGASKMSRILSMLPMSERAVASWTMTFEAHARAVDPIYGATSYILDLQEQVLNIQA 100 7*******************999856************************************************************* PP DUF260 93 elallkeel 101 +l++++e+l Pd.00g339000.m01 101 QLDEAHEQL 109 **99985 PP
2	DUF260	54.9	2.6e-17	209	282	28	101
DUF260 28 kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +f +h +FGas+++++l+ lp +er a ++++eA+ara dP yG+v+ il+lq+q+ + +a+l++++e+l Pd.00g339000.m01 209 TDFSSIHNVFGASKMSRILSMLPMSERVVASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQAQLDEAHEQL 282 7899*****************************************************************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MSSRTFNPCG ACKFLKQRCK RGCIFAPYFM HEEAITDFSS IHNVFGASKM SRILSMLPMS 60 ERAVASWTMT FEAHARAVDP IYGATSYILD LQEQVLNIQA QLDEAHEQLA CAIEAHEQLA 120 CAIAPVAGPN QDLENSIEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VYNENMNLNY 180 HVSGSYKNSV NIPTENVADG WVNNEEAITD FSSIHNVFGA SKMSRILSML PMSERVVASW 240 TMTFEAHARA VDPTYGCVSY ILDLQEQVLN IQAQLDEAHE QLARAVAPVA NPNQDLENSN 300 EQSEVANPTE QVAVAKPTEF ESLPQFSFTH TNNVDNENMN LNYHVSGSYK NTVNIPTENV 360 ADGWVNNEGT SSMSFFDMEW SFEDVDESLV DPWCLNMGKV QALTASTPAA DEVLEKCQLR 420 DAIQEKEEAL DILVVQDGTN WSMGQRQLFC MGRALLKRSR ILVLDEATAS MDNATDYILQ 480 KTIRTEFADC TVITVAHRIP TVMDCTKVLA ISDGKLVEYD EPMKLMNNEG SLFGQLVKEY 540 WSRSANARVS SDD

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MSSRTFNPCG ACKFLKQRCK RGCIFAPYFM HEEAITDFSS IHNVFGASKM SRILSMLPMS  60
ERAVASWTMT FEAHARAVDP IYGATSYILD LQEQVLNIQA QLDEAHEQLA CAIEAHEQLA  120
CAIAPVAGPN QDLENSIEQS EVANPTEQAA VAKPTEFESL PQFSFTHTNN VYNENMNLNY  180
HVSGSYKNSV NIPTENVADG WVNNEEAITD FSSIHNVFGA SKMSRILSML PMSERVVASW  240
TMTFEAHARA VDPTYGCVSY ILDLQEQVLN IQAQLDEAHE QLARAVAPVA NPNQDLENSN  300
EQSEVANPTE QVAVAKPTEF ESLPQFSFTH TNNVDNENMN LNYHVSGSYK NTVNIPTENV  360
ADGWVNNEGT SSMSFFDMEW SFEDVDESLV DPWCLNMGKV QALTASTPAA DEVLEKCQLR  420
DAIQEKEEAL DILVVQDGTN WSMGQRQLFC MGRALLKRSR ILVLDEATAS MDNATDYILQ  480
KTIRTEFADC TVITVAHRIP TVMDCTKVLA ISDGKLVEYD EPMKLMNNEG SLFGQLVKEY  540
WSRSANARVS SDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	2e-37	LBD family protein