PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g339480.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 659aa MW: 74681.4 Da PI: 6.9028

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g339480.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.3	8.4e-23	296	339	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ nrqvtfskRrngilKKA+ELS+LCd+++ +++fs+tg+ Pd.00g339480.m01 296 KLESSGNRQVTFSKRRNGILKKAKELSILCDVDIVLLMFSPTGR 339 67999*************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MSQSSGSRNT WKLCNCGGAI KRRTSWTDSN PRRRLEACEN NRQLHLEEQL LRTSSDNWCI 60 MNDGTKDPTI VMGISGKPAE LLELDLVLRD QIPVIRRFTG GGTVTVDHNT VFVTFICNTD 120 AVAGLQPYPR PIMSWSSLLY SRVFEGRGDF QLRENDYVFG NRKFGGNAQS ITKTRWIHHT 180 SFLWDYEVRN MAYLRLPKRI PEYRLARDHL EFICCLKDYI PRSVFLDETV DALRTQFSVR 240 SEQLDAFEAT SNAKFVPSTR LLTRQELEEA AFGSHAESTL SQSLSLMGRV KLKIKKLESS 300 GNRQVTFSKR RNGILKKAKE LSILCDVDIV LLMFSPTGRP TLLQGERSNV EEIISKFAQL 360 TPQERAKRKL ESLEALKKTF KKLDHDVNVQ EFMSSSTQTV QDLTTQVRVL QAQLTEIHKR 420 LSFWCNPDKV DNLEHLSQME DMLKESINRT RLHKENLGKH QLTSLNCTSQ FQNGMPSSLL 480 VGGMPEAQPL TWLLNNDNQH MILPNESNYL PHRDVDVECS TNASVPQYTS YFGTGASTST 540 GKQSEVGDPV QLDNMGQIPN MEGGGGLNEF DINACLSTEP GQQYVYPSYC SSNVDDKTLK 600 PEMEMNLPTN PVGYQVSSDF ELPRSMYENE HHAWLSSTGP SGIAVYKENT YQQQPNVGL

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MSQSSGSRNT WKLCNCGGAI KRRTSWTDSN PRRRLEACEN NRQLHLEEQL LRTSSDNWCI  60
MNDGTKDPTI VMGISGKPAE LLELDLVLRD QIPVIRRFTG GGTVTVDHNT VFVTFICNTD  120
AVAGLQPYPR PIMSWSSLLY SRVFEGRGDF QLRENDYVFG NRKFGGNAQS ITKTRWIHHT  180
SFLWDYEVRN MAYLRLPKRI PEYRLARDHL EFICCLKDYI PRSVFLDETV DALRTQFSVR  240
SEQLDAFEAT SNAKFVPSTR LLTRQELEEA AFGSHAESTL SQSLSLMGRV KLKIKKLESS  300
GNRQVTFSKR RNGILKKAKE LSILCDVDIV LLMFSPTGRP TLLQGERSNV EEIISKFAQL  360
TPQERAKRKL ESLEALKKTF KKLDHDVNVQ EFMSSSTQTV QDLTTQVRVL QAQLTEIHKR  420
LSFWCNPDKV DNLEHLSQME DMLKESINRT RLHKENLGKH QLTSLNCTSQ FQNGMPSSLL  480
VGGMPEAQPL TWLLNNDNQH MILPNESNYL PHRDVDVECS TNASVPQYTS YFGTGASTST  540
GKQSEVGDPV QLDNMGQIPN MEGGGGLNEF DINACLSTEP GQQYVYPSYC SSNVDDKTLK  600
PEMEMNLPTN PVGYQVSSDF ELPRSMYENE HHAWLSSTGP SGIAVYKENT YQQQPNVGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-101	M-type_MADS family protein