PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g344810.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 763aa MW: 83738.6 Da PI: 6.469

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g344810.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	73	100	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC++f+r C++G+ C++aHg+ Pd.00g344810.m01 73 WKTSLCSYFRRESaSCSHGSGCRYAHGE 100 8*************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence
MSSSSPTTEP SSVTSLLNPH SPLNGHDSTD QPQPTPPQDP ENQPQDDAVP GDKRKREENN 60 DDEPKPSVVP PLWKTSLCSY FRRESASCSH GSGCRYAHGE AELRPRPDNT WDPTSERAKK 120 QKNWKSEKLK DFLSEKAIQF KSAKKKKGMT LGFVSFQGVE QLQTAVKELD GISIGNKNIK 180 VADVIPRSFE KKTKSAMALP QNLQKTTEVE LEGENVEDSV VANGAEDGNG TSGRSARKVV 240 TPLAHMPYGD QLEHKKNSLM QILKRLTRNA RKACPDGIPL PEWILKSREI GGLPCSLEGI 300 LASPVVNGYR NKCEFSVGYS LQGKITVGFM LGNFREGVTA VEEPFDCPNV SRISCKYASI 360 FQEFLQHSSL PVWNRFKNIG FWRQLTVREG RRPGMSSDAE NCEANIAEVM LIVQVSSTGF 420 DDAQITSDFE RLAQAFSAGA TASSPSLPLT GLVIQDHQGI SNAAPADAPL RSLSISKGEG 480 SSEMQATDNV VEAKIHDYIS NLRFCISPTA FFQVNTLAAE KLYSLAGDWA ELGPDTLLFD 540 VCCGTGTIGL TLAHHVGMVI GIEMNASAVS DARRNAEING ITNCRFVSAK AEDVMRSLLE 600 EYINAPQKQE NNDIEGIDEV VATDEEKPIS TDNKPNPEEN SIHELESVKR FSNVVAIVDP 660 PRSGLHPTVI KALRTHPGLR KLVYISCNPE SLVANAIELC TPSPEKIEKN KNNRAWRNMS 720 SAGLARHRAK SMPASEPFRP VKAMAVDLFP HTIHCELVML LER

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence

MSSSSPTTEP SSVTSLLNPH SPLNGHDSTD QPQPTPPQDP ENQPQDDAVP GDKRKREENN  60
DDEPKPSVVP PLWKTSLCSY FRRESASCSH GSGCRYAHGE AELRPRPDNT WDPTSERAKK  120
QKNWKSEKLK DFLSEKAIQF KSAKKKKGMT LGFVSFQGVE QLQTAVKELD GISIGNKNIK  180
VADVIPRSFE KKTKSAMALP QNLQKTTEVE LEGENVEDSV VANGAEDGNG TSGRSARKVV  240
TPLAHMPYGD QLEHKKNSLM QILKRLTRNA RKACPDGIPL PEWILKSREI GGLPCSLEGI  300
LASPVVNGYR NKCEFSVGYS LQGKITVGFM LGNFREGVTA VEEPFDCPNV SRISCKYASI  360
FQEFLQHSSL PVWNRFKNIG FWRQLTVREG RRPGMSSDAE NCEANIAEVM LIVQVSSTGF  420
DDAQITSDFE RLAQAFSAGA TASSPSLPLT GLVIQDHQGI SNAAPADAPL RSLSISKGEG  480
SSEMQATDNV VEAKIHDYIS NLRFCISPTA FFQVNTLAAE KLYSLAGDWA ELGPDTLLFD  540
VCCGTGTIGL TLAHHVGMVI GIEMNASAVS DARRNAEING ITNCRFVSAK AEDVMRSLLE  600
EYINAPQKQE NNDIEGIDEV VATDEEKPIS TDNKPNPEEN SIHELESVKR FSNVVAIVDP  660
PRSGLHPTVI KALRTHPGLR KLVYISCNPE SLVANAIELC TPSPEKIEKN KNNRAWRNMS  720
SAGLARHRAK SMPASEPFRP VKAMAVDLFP HTIHCELVML LER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	0.0	C3H family protein