PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g344910.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 162aa    MW: 18323.2 Da    PI: 10.6559
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g344910.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC40.46.6e-13551441099
             NF-YC  10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                        +++++ +  ++P+ r+k+i+++++   +is +a  l+ ka e f+ ++   +   + + ++++l    ++++v++ + +dfl d vp++
  Pd.00g344910.m01  55 KNQTSNGNSYTFPMERVKRIIRSEDSEMRISHDAVFLVNKATEKFLQKFCEDAHACCVKDRKKSLAYKHLSSVVSKRKRYDFLSDYVPEK 144
                       56778888999**************999***********************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MATPGKATTP KKSKETKKPS SKAITPKKTQ ETKKPSIKKT PETKKPGTKK TISDKNQTSN  60
GNSYTFPMER VKRIIRSEDS EMRISHDAVF LVNKATEKFL QKFCEDAHAC CVKDRKKSLA  120
YKHLSSVVSK RKRYDFLSDY VPEKVKAEDA LAKRKLAEAK AD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115133RKKSLAYKHLSSVVSKRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.13e-30NF-YC family protein