PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g344980.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 453aa MW: 50181.1 Da PI: 9.009

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g344980.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g344980.m01 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	12.1	0.00059	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +++ Pd.00g344980.m01 143 WKCEKCSKKYAVQSDWKAHSKVC 165 58*****************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MMSEDGLSIP STVKGLAQEL SSSPNPNPNT DNQLKRKRNL PGTPGKYPDA EVIALSPKSL 60 MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYVC PERTCVHHEP 120 SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKVCGTREY RCDCGTLFSR 180 KDSFITHRAF CDALAAEESA RFGSASTTNM NPSFINGCNN ITNINPHHQP PRIPHFIPMF 240 QQEFSGSDPA AANNSHLNSN AFMPELVPTP SMDMFGSSSS SQTQWLINNN KFPEEASFNL 300 SMSSSSLARG LKEELEESKG TTTFNDTAFG FMSTSSNSSN NMSNQLSSYG HHHNKNEVES 360 FNDLVNSMSS STPATTIRDG SLFSSSFLSN KHLMNMPGAA NLIKQSRSEQ SSLTRDFLGV 420 GGDANSGVPF FQQELAKLAS MGDLSQYTSS GHQ

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MMSEDGLSIP STVKGLAQEL SSSPNPNPNT DNQLKRKRNL PGTPGKYPDA EVIALSPKSL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYVC PERTCVHHEP  120
SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKVCGTREY RCDCGTLFSR  180
KDSFITHRAF CDALAAEESA RFGSASTTNM NPSFINGCNN ITNINPHHQP PRIPHFIPMF  240
QQEFSGSDPA AANNSHLNSN AFMPELVPTP SMDMFGSSSS SQTQWLINNN KFPEEASFNL  300
SMSSSSLARG LKEELEESKG TTTFNDTAFG FMSTSSNSSN NMSNQLSSYG HHHNKNEVES  360
FNDLVNSMSS STPATTIRDG SLFSSSFLSN KHLMNMPGAA NLIKQSRSEQ SSLTRDFLGV  420
GGDANSGVPF FQQELAKLAS MGDLSQYTSS GHQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	106	KLKQRSNKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	2e-99	C2H2 family protein