PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g345480.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 214aa MW: 23972.7 Da PI: 6.3445

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g345480.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	60	80	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F + L Hi++H Pd.00g345480.m01 60 CNVCGKRFGSGQALGGHISVH 80 **********99999999988 PP
2	zf-C2H2	11.8	0.00073	126	148	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F++ L H r H Pd.00g345480.m01 126 HTCNICYKKFPTGQALGGHKRAH 148 79*************99999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MKNFQEEDRE YELVRDDHHV LSEDTKQGGV HGFDDSKGKE IVLGRLNCEN NQDPDRSRIC 60 NVCGKRFGSG QALGGHISVH FEPRLGWAKK DRGDMKIANQ TPNYNNDFAT KYKFPSSKRL 120 KFLDGHTCNI CYKKFPTGQA LGGHKRAHYF DEAQPVLEAP PAATVKVAST DDHDDGETID 180 PVDSSPLMQL AEQALHLASR RILDLDLNEP PKGE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49930.1	1e-15	C2H2 family protein