PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g346080.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 280aa    MW: 30707.7 Da    PI: 7.658
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g346080.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.6e-081737526
                      --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                      +C +far G+Ck G +C+F Hg
  Pd.00g346080.m01 17 PCLYFAR-GYCKNGTSCRFLHG 37
                      8******.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MDVCSEDPNS AGFGWKPCLY FARGYCKNGT SCRFLHGGLG DSVVDDGGQM AVGSPSKLEM  60
IDQSCHEALL RSKTAQQQQQ RLAAASQLMA SANSFPYSSK CMNFLLQQQQ TDAQRAASAA  120
ALMMGDDMHK FSRSRLERTD FWMNDNGAGS ESLTDSSGES RESSSSRSSS ETSTEEVKRK  180
APSSPPLLGW PIRKAELLPT INIMAAAVII VNKANTGQPR KERCIKYPAL SFQALIGSCW  240
EVEKMATREE TKCTTWLSVN LVIYEVNHYV RLVGFVSSSL