PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g346460.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 178aa MW: 19611.6 Da PI: 10.3059

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g346460.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Pd.00g346460.m01 44 FTCKTCNREFPSFQALGGHRASH 66 89**********99999998887 PP
2	zf-C2H2	12.7	0.00037	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H Pd.00g346460.m01 95 HECHICGLEFAVGQALGGHMRRH 117 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MKRGREDQDH QTLDLVNCLM LLSKIDQPDS SPTKAEDLKR GRVFTCKTCN REFPSFQALG 60 GHRASHKKPK LMPGGAVDLL QLAQSPGSPA KPKTHECHIC GLEFAVGQAL GGHMRRHREE 120 IQANAVRARS SPAMPVLKKS NSSKRVSSFN LDLNLDLRLG LPGHPSQYDL ATKLQLIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	6e-35	C2H2 family protein