PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g352880.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 171aa MW: 18325.6 Da PI: 10.0297

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g352880.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00024	105	127	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H + H Pd.00g352880.m01 105 ECPQCGAKFSSVTTLVDHVEKvH 127 5*****************99888 PP
2	zf-C2H2	17	1.7e-05	144	165	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+C+k F+++ L+ H + H Pd.00g352880.m01 144 CPKCSKGFRDPVALVEHVERdH 165 *****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
MVDHCLKHRF GPDHKCPGPK KPTTGFPFSG LLSRSRKEVL KPNHAPVASS SNWSNSFLTA 60 ASSFRASAEA SVAKLSSELS QKWQIAKDGA GQSSNSGSRN GQLEECPQCG AKFSSVTTLV 120 DHVEKVHERG GNRVGVKKAT IDACPKCSKG FRDPVALVEH VERDHGGTSR T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	2e-39	C2H2 family protein