PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g357720.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 654aa MW: 72732.2 Da PI: 7.12

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g357720.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.3e-08	243	269	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f t Ck+G rCkF+H++ Pd.00g357720.m01 243 PGEPDCPYFINTQRCKFGMRCKFNHPK 269 5789*********************96 PP
2	zf-CCCH	35.7	1.4e-11	292	316	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++++G+Ck+G++CkF+H++ Pd.00g357720.m01 292 EPPCAFYLKMGQCKFGATCKFHHPK 316 79*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence
MTVEEVIDHD IGAWNFEFIE GLLSDSKKQA IRLVPIGSRF AGDILIWPLE KSRIYSIKFE 60 SNCLELEVVR GISDNIRRGR WELYPLLCKI QDQLGHPNFE FSSWTWHPRS ANVVADHIAN 120 LARVKMNKET WCLGQLLHLQ INLGFTSPNN QCRAISKDTA PAQSAAADAA ATAGLSRVYT 180 SHALTDSYLS DLTLRYLSGS DPSASATDHH SRTFPISSPA FPASNAPLKV PLVAPSEFLS 240 ERPGEPDCPY FINTQRCKFG MRCKFNHPKD KLAAAVASEN SDVFALPERP SEPPCAFYLK 300 MGQCKFGATC KFHHPKDIQI PSAEQENKIG EIGTTIQLEG TGFAVKPPAL SFNSKELPVR 360 LGEPDCPFYL KTGSCKKVHT KFTEAWQGWE EYKPLHERIK EADCVMEGLD KAINILNSVV 420 PMKTCSCTCK LQSLRNADEG LLVHLQSLLN IEQEIQKAEE FNLPHNHFSL PSPNLLVLPL 480 LLFSMSRPLS KLLFKGISGF PAARSNKIVS GSFYQNGIRY STSVPNDSDT HDDFKPANKF 540 DGSGLSLKEL VEQDVKDNPV MLYMKGVPEV PQCGFSSLAV RVLKQYAVPL SARNILEDPE 600 LKTAVKAFSH WPTFPQIFIK GEFIGGSDII LNMHQSGELK EKLKDIAVNQ EKSA

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence

MTVEEVIDHD IGAWNFEFIE GLLSDSKKQA IRLVPIGSRF AGDILIWPLE KSRIYSIKFE  60
SNCLELEVVR GISDNIRRGR WELYPLLCKI QDQLGHPNFE FSSWTWHPRS ANVVADHIAN  120
LARVKMNKET WCLGQLLHLQ INLGFTSPNN QCRAISKDTA PAQSAAADAA ATAGLSRVYT  180
SHALTDSYLS DLTLRYLSGS DPSASATDHH SRTFPISSPA FPASNAPLKV PLVAPSEFLS  240
ERPGEPDCPY FINTQRCKFG MRCKFNHPKD KLAAAVASEN SDVFALPERP SEPPCAFYLK  300
MGQCKFGATC KFHHPKDIQI PSAEQENKIG EIGTTIQLEG TGFAVKPPAL SFNSKELPVR  360
LGEPDCPFYL KTGSCKKVHT KFTEAWQGWE EYKPLHERIK EADCVMEGLD KAINILNSVV  420
PMKTCSCTCK LQSLRNADEG LLVHLQSLLN IEQEIQKAEE FNLPHNHFSL PSPNLLVLPL  480
LLFSMSRPLS KLLFKGISGF PAARSNKIVS GSFYQNGIRY STSVPNDSDT HDDFKPANKF  540
DGSGLSLKEL VEQDVKDNPV MLYMKGVPEV PQCGFSSLAV RVLKQYAVPL SARNILEDPE  600
LKTAVKAFSH WPTFPQIFIK GEFIGGSDII LNMHQSGELK EKLKDIAVNQ EKSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	2e-50	C3H family protein